DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lmx1a and LMX1A

DIOPT Version :9

Sequence 1:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001167540.1 Gene:LMX1A / 4009 HGNCID:6653 Length:382 Species:Homo sapiens


Alignment Length:426 Identity:165/426 - (38%)
Similarity:215/426 - (50%) Gaps:101/426 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   266 IKCEKNFE---------------------LCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQL 309
            :|.|:||:                     :||||.:.|.||||:.:.|:.|||||:.|..|...|
Human     5 LKMEENFQSAIDTSASFSSLLGRAVSPKSVCEGCQRVILDRFLLRLNDSFWHEQCVQCASCKEPL 69

  Fly   310 HHTCYVRNSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGE 374
            ..||:.|:.|||||.||::||.|||..|..||.|.|.||| ....|:||.||.|..|...||||:
Human    70 ETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMR-AQKSVYHLSCFCCCVCERQLQKGD 133

  Fly   375 QFMLRDGQLFCYRHDLEKE---MFLAAAAAQHCGFVGLDEEDLLRPRDG-----------RRGPK 425
            :|:|::|||.| :.|.|||   :.|.:.||...| ...|||.|.:...|           .:.||
Human   134 EFVLKEGQLLC-KGDYEKERELLSLVSPAASDSG-KSDDEESLCKSAHGAGKGTAEEGKDHKRPK 196

  Fly   426 RPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNG 490
            |||||||:|||:.|||||:.|.||||||||.||.:|||||||||||||||||||||:.|:.:|  
Human   197 RPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRQQQ-- 259

  Fly   491 GSGGGSGSGRGTGNSSATDDKDTNDKEDKCVKQELGGDSSGYLGGLD----------------ST 539
                              ..:|..:.:.....|..||.|:|..|.::                |.
Human   260 ------------------QQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLLAIEQSV 306

  Fly   540 FASQPLNPNLPFSPDDYPANSNDSFCSSDLSLDGSNFDQLDDDADSLSLNNLE--LQSTSSSGNQ 602
            ::|.|....|  :|...|.:....:.:..|      |..|  |:|..||:||.  ..:||.:|  
Human   307 YSSDPFRQGL--TPPQMPGDHMHPYGAEPL------FHDL--DSDDTSLSNLGDCFLATSEAG-- 359

  Fly   603 HSHSHSNPHDMLANLNNSLINPIDKLYLMQNSYFSS 638
                         .|.:.:.||||.||.||||||:|
Human   360 -------------PLQSRVGNPIDHLYSMQNSYFTS 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757 27/51 (53%)
LIM 333..388 CDD:295319 27/54 (50%)
Homeobox 427..480 CDD:278475 43/52 (83%)
LMX1ANP_001167540.1 LIM1_Lmx1a 35..86 CDD:188756 26/50 (52%)
LIM2_Lmx1a_Lmx1b 94..148 CDD:188764 26/55 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 161..208 19/47 (40%)
Homeobox 198..252 CDD:395001 44/53 (83%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 252..285 9/52 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 74 1.000 Domainoid score I9172
eggNOG 1 0.900 - - E33208_3BAC6
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 253 1.000 Inparanoid score I3205
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D323174at33208
OrthoFinder 1 1.000 - - FOG0001820
OrthoInspector 1 1.000 - - otm41868
orthoMCL 1 0.900 - - OOG6_105498
Panther 1 1.100 - - LDO PTHR24208
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3844
SonicParanoid 1 1.000 - - X1182
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1312.860

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