DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lmx1a and LMO2

DIOPT Version :10

Sequence 1:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_005565.2 Gene:LMO2 / 4005 HGNCID:6642 Length:227 Species:Homo sapiens


Alignment Length:237 Identity:64/237 - (27%)
Similarity:95/237 - (40%) Gaps:52/237 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 GTSVATSQLGGAVAAAIAAAAAAAAAATTPTSTGPAATGSGNANGSGNGNGNGNGNGNGNGNGNG 239
            |::|...:.|||                    :.||...|.....||     |:|.|.|......
Human     3 GSAVTVLERGGA--------------------SSPAERRSKRRRRSG-----GDGGGGGGARAPE 42

  Fly   240 GGAATAS---------------------AAAASKLSADCSGRTEVGHIKCEKNFELCEGCGQKIH 283
            |..|.|:                     ::|..:.|.|.|.......::...:...|.||.|.|.
Human    43 GVRAPAAGQPRATKGAPPPPGTPPPSPMSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIG 107

  Fly   284 DRFLMNVGDANWHEQCLACCYCGMQLHHT---CYVRNSKLYCKMDYDRLFGVK--CSSCCHAILP 343
            ||:.:...|..|||.||:|..||.:|...   .|.:..:..|:.||.||||..  |:||...|..
Human   108 DRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 172

  Fly   344 QELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFC 385
            .|:.|| :.:.|:||.||.|.||:.....|::::|.:..:.|
Human   173 YEMTMR-VKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVC 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757 20/54 (37%)
LIM 333..388 CDD:413332 18/55 (33%)
Homeodomain 425..481 CDD:459649
LMO2NP_005565.2 LIM1_LMO2 99..154 CDD:188770 20/54 (37%)
LIM2_LMO2 163..218 CDD:188771 18/52 (35%)
Blue background indicates that the domain is not in the aligned region.

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