Protein Alignment Lmx1a and pdlim5b

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_956490.1
• Gene: pdlim5b / 393165
• ZFINID: ZDB-GENE-040426-908
• Length: 628
• Species: Danio rerio
• Alignment Length: 472
• Identity: 98/472 - (20%)
• Similarity: 162/472 - (34%)
• Gaps: 119/472 - (25%)

  Fly    13 PVGGSLYSLQQNHGGARFLDNPNPGSMTASSGNSLHLSNSN-----NNLPTSISGNNSPTAT--- 69
            |:.||....|           |:|.|:::.:.||....:|.     |:...|.||::||...
Zfish   174 PLAGSAQRSQ-----------PSPNSISSPASNSAPKPSSGRSPFANSSSASSSGSSSPARVTAP 227

  Fly    70 ------ASLTGQHQ---------QHQQQQHQQQQQHPHQQHQQHQQQHAASTTPVPINSCPTPTG 119
                  ||.|....         .:|........|.......:.:||:..:..||    ..|...
Zfish   228 APAPPPASATPHSSVYNTPISLYSNQNACEVAMGQRRGLMESKGEQQNGTARKPV----LETEVN 288

  Fly   120 H-SPLSSSSSNSNHNNNNN-----------------------NNNGGSSSNNLHSACNTLTAAAV 160
            | ||||.:|......:..:                       |:....|....:.|...|..::.
Zfish   289 HVSPLSDASKKRLIEDTEDWHPRTGTTQSRSFRILAQITGTENDQAQESRPGKNEAVEDLQPSSH 353

  Fly   161 AAASAAAVAAPSPAGTSVATSQLGGAVAAAIAA--AAAAAAAATTPTSTGPAATGSGNANGSGNG 223
            :::|...: :.||||   ||.| |..::||.|.  ..:::::|..|.|.|.....:|.:.|.|..
Zfish   354 SSSSVFTM-SKSPAG---ATRQ-GNGISAAPAKHWQTSSSSSAGFPRSGGAGVAPTGPSVGRGVS 413

  Fly   224 NGNGNG--------NGNGNGNGNGGGAATASAAAASKLSADC----------------------- 257
            :....|        :...........|....|...:.:.|.|
Zfish   414 SSVPKGPERPVPQPHPRDQDESVVQRAEHMPAGTRTPMCAHCNTVIRGPFLVAMGKSWHKDEFTC 478

  Fly   258 ----SGRTEVGHIK---------CEKNF--ELCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGM 307
                |...:||.::         |.:.|  ..|..|.:||... ::|.....||..|..|..|..
Zfish   479 SHCRSSLADVGFVEERGSVYCVLCYEEFLAPTCFQCHKKIIGE-VINALKQTWHVNCFLCASCKQ 542

  Fly   308 QL-HHTCYVRNSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQ 371
            .: ::|.::.:.:.||:.||..|||..|..|...|...:..:..: .|.:|..||||..|...|:
Zfish   543 PIGNNTFHLEDRQPYCEKDYYSLFGTGCHGCDFPIEAGDKFLEAL-GFTWHDTCFVCAVCSTSLE 606

  Fly   372 KGEQFMLRDGQLFCYRH 388
             |:.|..:..:..|.:|
Zfish   607 -GQTFFSKKDKPLCKKH 622

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	14/52 (27%)
		LIM	333..388	CDD:295319	14/54 (26%)
		Homeobox	427..480	CDD:278475
pdlim5b	NP_956490.1	PDZ_signaling	11..80	CDD:238492
		DUF4749	243..335	CDD:292558	14/95 (15%)
		LIM1_Enigma_like	452..503	CDD:188747	5/50 (10%)
		LIM2_Enigma_like	511..562	CDD:188748	13/51 (25%)
		LIM	570..624	CDD:295319	15/55 (27%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910