Protein Alignment Lmx1a and vvl

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_001303384.1
• Gene: vvl / 38752
• FlyBaseID: FBgn0086680
• Length: 742
• Species: Drosophila melanogaster
• Alignment Length: 299
• Identity: 88/299 - (29%)
• Similarity: 115/299 - (38%)
• Gaps: 99/299 - (33%)

  Fly    12 NPVGGSLYS----LQQNHGGARFLDNPNPGSMTASSGNSLHLSN----SNNNLPTS--------- 59
            |.:||.:..    ...:|||.    :|:.....:..|...|..:    |..|:.:|
  Fly   366 NTLGGDMMDGMPPGHMHHGGY----HPHHDMHGSPMGTHSHSHSPPMLSPQNMQSSAVAAHQLAA 426

  Fly    60 -----ISGNNSPTAT---ASLTGQHQQHQQQQHQQQQQHPHQQHQQH-QQQHAASTTPVPINSCP 115
                 |..:||..|.   |||....||.||||.|||||  |||.||| ||||..:|......|..
  Fly   427 HXQSEIQESNSAAAASTPASLNSLSQQQQQQQQQQQQQ--HQQQQQHQQQQHTPNTPSSSAGSSA 489

  Fly   116 TPTG-----HSPL-SSSSSNSNHNNNNNNNNGGSSSNNLHSACNT-------------LTAAAVA 161
            |.|.     .||| |||:.|..:||||||||..||:||.::..|.             ..|:::|
  Fly   490 TMTSQVMSPQSPLGSSSAGNQANNNNNNNNNNNSSTNNNNNNNNNEEQVKHHQQQQQQQQASSIA 554

  Fly   162 AASAAAV------------AAPSP-----------------------------AGTSVATSQLGG 185
            ||:|||:            ..|.|                             .||| :.|||
  Fly   555 AAAAAAMYMDPMRYQHPHHPHPHPHQHPHLNPAHHPHLFHTSDQLQHSQQQTVGGTS-SNSQL-- 616

  Fly   186 AVAAAIAAAAAAAAAATTPTSTGPAATGSGNANGSGNGN 224
                :..|.:.:......|:|..||.:.|....|..|.|
  Fly   617 ----SPGAGSNSGLPLQPPSSASPAGSASSVLGGHLNLN 651

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757
		LIM	333..388	CDD:295319
		Homeobox	427..480	CDD:278475
vvl	NP_001303384.1	POU	212..286	CDD:197673
		Homeobox	307..360	CDD:278475

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R3844
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.940