Protein Alignment Lmx1a and gsb-n

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_523862.1
• Gene: gsb-n / 38004
• FlyBaseID: FBgn0001147
• Length: 449
• Species: Drosophila melanogaster
• Alignment Length: 267
• Identity: 65/267 - (24%)
• Similarity: 98/267 - (36%)
• Gaps: 92/267 - (34%)

  Fly   421 RRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 485
            :|..:|.||..|::|.:..:.:|.::..|....||.||:.|.|:...:||||.|:||:::
  Fly   179 KRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLR----- 238

  Fly   486 AKQNGGSGGG-----SGS---GRGTGNSSATDDKDTNDKEDKCVKQELG------GDSSGY---- 532
             |.:|||..|     |||   |.|.|.|.||              ..||      |..:||
  Fly   239 -KHSGGSNSGLSPMNSGSSNVGVGVGLSGAT--------------APLGYGPLGVGSMAGYSPAP 288

  Fly   533 --------------------------------------LGGLDST-FASQPLNPNLPFSPDDYPA 558
                                                  :||.|.. .|:|...|.....|..:.:
  Fly   289 GTTATGAGMNDGVHHAAHAPSSHHSAATAAAAAHHHTQMGGYDLVQSAAQHGFPGGFAQPGHFGS 353

  Fly   559 NSNDSFCSSDLSLDGSNFDQLDDDADSLS-----------LNNLELQSTSSSGNQHSHSHSNPHD 612
            .:......|.|::|  :|.:|  .|||:|           .:.||..|..|....|:.::.|.|.
  Fly   354 QNYYHQDYSKLTID--DFSKL--TADSVSKISPSLHLSDNYSKLEAPSNWSQAAYHAAANYNAHV 414

  Fly   613 MLANLNN 619
            ....||:
  Fly   415 AQHQLND 421

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757
		LIM	333..388	CDD:295319
		Homeobox	427..480	CDD:278475	19/52 (37%)
gsb-n	NP_523862.1	PAX	20..141	CDD:278709
		Homeobox	185..238	CDD:278475	19/52 (37%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910