Protein Alignment Lmx1a and otp

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_001286654.1
• Gene: otp / 37364
• FlyBaseID: FBgn0015524
• Length: 416
• Species: Drosophila melanogaster
• Alignment Length: 563
• Identity: 104/563 - (18%)
• Similarity: 145/563 - (25%)
• Gaps: 275/563 - (48%)

  Fly   146 NNLHS------ACNTLTAAAVAAASAAAVAAPSPAGTSVATSQLGGAVAAAIAAAAAAAAAATTP 204
            |||.:      .|:...||..|..:........|.|.::|  .|||       .|....::...|
  Fly     3 NNLGANVLGPKDCDLPKAALTALHAGVNSFGQLPVGPNLA--DLGG-------GAGGGGSSGGVP 58

  Fly   205 TSTGPA-------ATGSGNANGSGNG-NGNGNGNGNGNGNGNGGGAATASAAAASKLSADCSGRT 261
            ...|.|       ...:.||...||| :|||||| |.|||||...:
  Fly    59 VGGGVARLHISGGLCDNSNALNGGNGSSGNGNGN-NNNGNGNNNNS------------------- 103

  Fly   262 EVGHIKCEKNFELCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDY 326
                                                                             
  Fly   104 ----------------------------------------------------------------- 103

  Fly   327 DRLFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLE 391
                                                       :|:.:|.:.::.|
  Fly   104 -------------------------------------------MQQQDQHLDKNKQ--------- 116

  Fly   392 KEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREA 456
                                             ||.||..|..|..:.:..|.::..|...:||.
  Fly   117 ---------------------------------KRHRTRFTPAQLNELERCFSKTHYPDIFMREE 148

  Fly   457 LAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQN-------------------------------- 489
            :|...||:...|||||||:|||.||  ||...|
  Fly   149 IAMRIGLTESRVQVWFQNRRAKWKK--RKKTTNVFRTPGALLPSHGLPPFGANITNIAMGDGLCG 211

  Fly   490 ----GGSGGGSG-----SGRGTGNSSATDDKDTNDKEDKCVK----------QELG----GDSSG 531
                ||.....|     :|.|..|.|:......|...:..:.          |..|    |||..
  Fly   212 TGMFGGDRWSVGVNPMTAGFGQLNQSSPLSSSLNSGLNSGINMGSALGAGSYQHYGLNALGDSMM 276

  Fly   532 Y---LGGLD-----STFASQPLNPNLPFSPDDYPANSNDSFCSSDLSLDGSNFDQLDDDADSLSL 588
            |   :||:.     |..|:.|  ||:         ||..|.....||.. .|..|.:.:.:.:.|
  Fly   277 YQHSVGGVSCGPSGSPSATTP--PNM---------NSCSSVTPPPLSAQ-PNSSQNELNGEPMPL 329

  Fly   589 NNLELQSTSSSGNQHSHSH-----SNPHDMLANLNNSLINPID 626
            :..:.|.|.....|.:|.|     ..|......|..|:.:|.|
  Fly   330 HQQQQQQTHQHQQQQTHQHHPMAPPTPTQQQQQLPQSMQSPSD 372

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	0/51 (0%)
		LIM	333..388	CDD:295319	3/54 (6%)
		Homeobox	427..480	CDD:278475	21/52 (40%)
otp	NP_001286654.1	Homeobox	119..167	CDD:278475	17/47 (36%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	45	1.000	Domainoid score	I3555
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	1.000