Protein Alignment Lmx1a and Lhx8

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: XP_006233590.1
• Gene: Lhx8 / 365963
• RGDID: 1308749
• Length: 367
• Species: Rattus norvegicus
• Alignment Length: 285
• Identity: 93/285 - (32%)
• Similarity: 144/285 - (50%)
• Gaps: 32/285 - (11%)

  Fly   209 PAATGSGNANGSGNGNGNGNGNGNGNGNGNGGGAATASAAAASKLSADCSGRTEVGHIKCEKNFE 273
            |||..:|.........|..|..|.|:.:         |.::::.||...|.::......|.....
  Rat    39 PAALAAGRTRKGAGEEGLVNPEGAGDED---------SCSSSAPLSPSSSPQSMASGSVCPPGKC 94

  Fly   274 LCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQL--HHTCYVRNSKLYCKMDYDRLFGVKCSS 336
            :|..||.:|.|::|:.|.|..||.:||:|..|...|  |.:||:::..::||:||.|.:|.:||.
  Rat    95 VCSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSR 159

  Fly   337 CCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRH------DLEKEM- 394
            |...|...:.|.|...| |:||.||.|::|:..|..||:|.|.:.::.|..|      :|::|:
  Rat   160 CGRHIHSTDWVRRAKGN-VYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCMLDNLKREVE 223

  Fly   395 ---FLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREA 456
               .::...|.      |.|:|:..|:..    ||.||..|:.|.:..:|.|.|...|..:..:.
  Rat   224 NGNGISVEGAL------LTEQDVNHPKPA----KRARTSFTADQLQVMQAQFAQDNNPDAQTLQK 278

  Fly   457 LAKDTGLSVRVVQVWFQNQRAKMKK 481
            ||:.||||.||:||||||.||:.||
  Rat   279 LAERTGLSRRVIQVWFQNCRARHKK 303

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	21/53 (40%)
		LIM	333..388	CDD:295319	20/54 (37%)
		Homeobox	427..480	CDD:278475	24/52 (46%)
Lhx8	XP_006233590.1	LIM1_Lhx7_Lhx8	95..150	CDD:188767	21/54 (39%)
		LIM2_Lhx7_Lhx8	157..211	CDD:188769	20/54 (37%)
		Homeobox	250..302	CDD:278475	24/51 (47%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910