Protein Alignment Lmx1a and Lhx4

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_001101818.2
• Gene: Lhx4 / 360858
• RGDID: 1308044
• Length: 390
• Species: Rattus norvegicus
• Alignment Length: 335
• Identity: 119/335 - (35%)
• Similarity: 164/335 - (48%)
• Gaps: 75/335 - (22%)

  Fly   275 CEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSCCH 339
            |.||.|.|.|:|::.|.|.:||..||.|..|.|||...|:.|...:|||.|:.:.||.||::|..
  Rat    30 CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFGTKCTACQQ 94

  Fly   340 AILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQF-MLRDGQLFCYRHDLEKEMFLAAAAAQH 403
            .|.|.: |:|...:||:||.||.|..|...|..|::| ::.||:|.|      ||
  Rat    95 GIPPTQ-VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVC------KE---------- 142

  Fly   404 CGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVV 468
                  |.|...:..|...|.|||||.:|::|.:..|.::..||||.|.|||.|:.:|||.:|||
  Rat   143 ------DYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVV 201

  Fly   469 QVWFQNQRAKMKKIQRKA---------KQNGGSGGGSGSGRGTGNSSATD----DKDTNDKEDKC 520
            ||||||:|||.|::::.|         |....|.|||...:   .|||.|    |.:.:.:||:
  Rat   202 QVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEK---ESSAEDCGVSDSELSFREDQ- 262

  Fly   521 VKQELG---------GDSSG--YLGG---LDSTFAS-QPLNPNLPF----SPD------------ 554
            :..|||         ||.:|  .:.|   :|.|..| |.|....|:    ||.
  Rat   263 ILSELGHTNRIYGNVGDVTGGQLMNGSFSMDGTGQSYQDLRDGSPYGIPQSPSSISSLPSHAPLL 327

  Fly   555 ---DYPANSN 561
               ||..:||
  Rat   328 SGLDYTVDSN 337

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	24/51 (47%)
		LIM	333..388	CDD:295319	22/55 (40%)
		Homeobox	427..480	CDD:278475	30/52 (58%)
Lhx4	NP_001101818.2	LIM1_Lhx4	30..81	CDD:188852	23/50 (46%)
		LIM2_Lhx3_Lhx4	89..144	CDD:188762	23/77 (30%)
		Homeobox	160..214	CDD:395001	30/53 (57%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910