DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lmx1a and eve

DIOPT Version :9

Sequence 1:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_523670.2 Gene:eve / 36039 FlyBaseID:FBgn0000606 Length:376 Species:Drosophila melanogaster


Alignment Length:81 Identity:27/81 - (33%)
Similarity:37/81 - (45%) Gaps:19/81 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   419 DGRRGPKRP--------RTILTSQQ----RKQF-KASFDQSPKPCRKVREALAKDTGLSVRVVQV 470
            :|.||.:.|        ||..|..|    .|:| |.::...|:.|.     ||....|....::|
  Fly    57 NGSRGSEIPADPSVRRYRTAFTRDQLGRLEKEFYKENYVSRPRRCE-----LAAQLNLPESTIKV 116

  Fly   471 WFQNQRAKMKKIQRKA 486
            ||||:|.|.|: ||.|
  Fly   117 WFQNRRMKDKR-QRIA 131

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757
LIM 333..388 CDD:295319
Homeobox 427..480 CDD:278475 20/65 (31%)
eveNP_523670.2 Homeobox 74..126 CDD:278475 19/56 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 45 1.000 Domainoid score I3555
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.910

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