DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lmx1a and eve

DIOPT Version :10

Sequence 1:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_523670.2 Gene:eve / 36039 FlyBaseID:FBgn0000606 Length:376 Species:Drosophila melanogaster


Alignment Length:81 Identity:27/81 - (33%)
Similarity:37/81 - (45%) Gaps:19/81 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   419 DGRRGPKRP--------RTILTSQQ----RKQF-KASFDQSPKPCRKVREALAKDTGLSVRVVQV 470
            :|.||.:.|        ||..|..|    .|:| |.::...|:.|.     ||....|....::|
  Fly    57 NGSRGSEIPADPSVRRYRTAFTRDQLGRLEKEFYKENYVSRPRRCE-----LAAQLNLPESTIKV 116

  Fly   471 WFQNQRAKMKKIQRKA 486
            ||||:|.|.|: ||.|
  Fly   117 WFQNRRMKDKR-QRIA 131

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757
LIM 333..388 CDD:413332
Homeodomain 425..481 CDD:459649 20/68 (29%)
eveNP_523670.2 Homeodomain 71..127 CDD:459649 19/60 (32%)
Blue background indicates that the domain is not in the aligned region.

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