DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lmx1a and Lim3

DIOPT Version :9

Sequence 1:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001260559.1 Gene:Lim3 / 35184 FlyBaseID:FBgn0002023 Length:555 Species:Drosophila melanogaster


Alignment Length:630 Identity:175/630 - (27%)
Similarity:236/630 - (37%) Gaps:231/630 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 HQQHQQQ-QH-QQQQQHPHQQ----------------HQQ-----HQQQHAASTTPVPINSCPTP 117
            |.|||.| || .|||.|||||                |||     ||||......|      |||
  Fly    14 HHQHQHQLQHPPQQQPHPHQQLQHPLQQQQHLSAMDNHQQHQPHIHQQQQQQQQLP------PTP 72

  Fly   118 TGHSPLSSSSSNSNHNNNNNNNNGGSSSNNLHSACNTLTAAAVAAASAAAVAAPSPAGTSVATSQ 182
            .....:........|.::|            |.|.:.              ..|:|.        
  Fly    73 QASHLVGGQQQQQQHPHHN------------HLAVDQ--------------DDPNPE-------- 103

  Fly   183 LGGAVAAAIAAAAAAAAAATTPTSTGPAATGSGNANGSGNGNGNGNGNGNGNGNGNGGGAATASA 247
               .|.|.|  :...|..||.|.                                          
  Fly   104 ---LVLALI--SRNRALEATIPK------------------------------------------ 121

  Fly   248 AAASKLSADCSGRTEVGHIKCEKNFELCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHT 312
                                       |.||.:.|.|||::.|.:..||.:||.|..|..||:..
  Fly   122 ---------------------------CGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDK 159

  Fly   313 CYVRNSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQF- 376
            |:.||.:|:||.|:.:.:|.|||:|...|.|.::|.|...| |:||.||:|..|...|..|::| 
  Fly   160 CFARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDN-VYHLQCFLCAMCSRTLNTGDEFY 223

  Fly   377 MLRDGQLFCYRHDLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKA 441
            ::.|.:|.|.| |.|:      |.|:     ||..:..|   ||.:..|||||.:|::|.:..|.
  Fly   224 LMEDRKLICKR-DYEE------AKAK-----GLYLDGSL---DGDQPNKRPRTTITAKQLETLKT 273

  Fly   442 SFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSGGGSGSGRG-TGNS 505
            :::.||||.|.|||.|::||||.:|||||||||:|||.|::    |::.|....|...|. .||.
  Fly   274 AYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL----KKDAGRTRWSQYFRSMKGNC 334

  Fly   506 SATDDKDTNDKE-----DKCVKQELGGDS------------------SGYLGGLDS--------- 538
            |...||..:..|     |.....:|..||                  ..|:.|..|         
  Fly   335 SPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDEGASPHSIRGSYMHGSSSPSQYPPSSR 399

  Fly   539 ---------TFASQPLNPNLPFSPDDYPANS-----------NDSFCSSDLSLDGS------NFD 577
                     ||.|.|  .|:.::..|....|           :.|...||||.|.|      :|.
  Fly   400 SPPPVGQGHTFGSYP--DNIVYTNIDQAVGSSLHASKAHHRLHSSNNVSDLSNDSSPDQGYPDFP 462

  Fly   578 QLDDD--ADSLSLNNLELQSTSSSGNQHSHSHSNPHDMLANLNNS 620
            ...|.  .||.|.|      |:|:.|..:::.|:.|    |.|||
  Fly   463 PSPDSWLGDSGSTN------TTSANNNANNNSSSSH----NNNNS 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757 23/51 (45%)
LIM 333..388 CDD:295319 22/55 (40%)
Homeobox 427..480 CDD:278475 31/52 (60%)
Lim3NP_001260559.1 LIM1_Lhx3_Lhx4 122..173 CDD:188754 22/50 (44%)
LIM2_Lhx3_Lhx4 181..236 CDD:188762 22/56 (39%)
Homeobox 259..312 CDD:278475 31/52 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45444992
Domainoid 1 1.000 47 0.796 Domainoid score I4515
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24208
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.940

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