Protein Alignment Lmx1a and prd

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_723721.1
• Gene: prd / 34629
• FlyBaseID: FBgn0003145
• Length: 613
• Species: Drosophila melanogaster
• Alignment Length: 260
• Identity: 56/260 - (21%)
• Similarity: 94/260 - (36%)
• Gaps: 72/260 - (27%)

  Fly   421 RRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRK 485
            :|..:|.||..::.|..:.:.:|:::..|....||.||:.|.|:...:||||.|:||:::| |..
  Fly   210 KRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRK-QHT 273

  Fly   486 AKQNGGSGGGSGSGRGTGNSSATD-------------------DKDTNDKEDKCVKQELGGDSSG 531
            :...|..||.:.|......||:..                   |..|..::    :.:..|..:.
  Fly   274 SVSGGAPGGAAASVSHVAASSSLPSVVSSVPSMAPLAMMPGSLDPATVYQQ----QYDFYGSHAN 334

  Fly   532 YLGGLDSTFASQPLNPNLPFSPDDYPANSNDSFCSSDLSLDGSN--------------------- 575
            ......:..||..|:|.:..:|..:....|.|..::...:.|.|
  Fly   335 ISVSAAAPMASSNLSPGITTTPPHHHQFYNPSANTASYIMPGENGNTTPTGNIIVSSYETQLGSV 399

  Fly   576 ------------------------FDQLDDDADSLSLNNLELQSTSSSGNQHSHSHSNPHDMLAN 616
                                    |.||....:|||........|||||   ::|.::|...|||
  Fly   400 YGTETETHQTMPRNESPNESVSSAFGQLPPTPNSLSAVVSGAGVTSSSG---ANSGADPSQSLAN 461

  Fly   617  616
              Fly   462  461

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757
		LIM	333..388	CDD:295319
		Homeobox	427..480	CDD:278475	18/52 (35%)
prd	NP_723721.1	PAX	27..154	CDD:238076
		Homeobox	217..269	CDD:278475	18/51 (35%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910