Protein Alignment Lmx1a and B-H1

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_523387.1
• Gene: B-H1 / 32724
• FlyBaseID: FBgn0011758
• Length: 544
• Species: Drosophila melanogaster
• Alignment Length: 507
• Identity: 96/507 - (18%)
• Similarity: 143/507 - (28%)
• Gaps: 219/507 - (43%)

  Fly    18 LYSLQQNHGGARFLDNPNPGSMTASSGNSLHLSNSNNNLPTSISGNNSPTATASLTGQHQQ---- 78
            |.:|||.|    ...:.:.|....:..:|:|.:       |::|...| |.|||..|:..:
  Fly    26 LSTLQQQH----HQHHLHYGLQPPAVAHSIHST-------TTMSSGGS-TTTASGIGKPNRSRFM 78

  Fly    79 -------------HQQQQHQQQQQHPHQQHQQHQQQHAASTTPVPINSCPTPTGHSPLSSSSSNS 130
                         ::||||.||..|       |...:.:.                  ||..|:.
  Fly    79 INDILAGSAAAAFYKQQQHHQQLHH-------HNNNNNSG------------------SSGGSSP 118

  Fly   131 NHNNNNNNNNGGSSSNNLHSACNTLTAAAVAAASAA--------------------------AVA 169
            .|:|||||.||.:        |.....|.|....:|                          ...
  Fly   119 AHSNNNNNINGDN--------CEASNVAGVGVLPSALHHPQPHPPTHPHTHPHALMHPHGKLGHF 175

  Fly   170 APSPAGTSVATSQLGGAVAAAIAAAAAAAAAATTPTSTGPAATGSGNANGSGNGNGNGNGNGNGN 234
            .|:..|..:..:|...|:....|||||||||                                 .
  Fly   176 PPTAGGNGLNVAQYAAAMQQHYAAAAAAAAA---------------------------------R 207

  Fly   235 GNGNGGGAATASAAAASKLSADCSGRTEVGHIKCEKNFELCEGCGQKIHDRFLMNVGDANWHEQC 299
            .|.....||.|:||||...:....|..:.|       ..|....|..:.|       .:::||:.
  Fly   208 NNAAAAAAAAAAAAAAGVAAPPVDGGVDGG-------VGLAPPAGGDLDD-------SSDYHEEN 258

  Fly   300 LACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCY 364
            ..|....|..|..|  .|..   |.|
  Fly   259 EDCDSGNMDDHSVC--SNGG---KDD--------------------------------------- 279

  Fly   365 ACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRT 429
                           ||.              :..:.......||.::.           ::.||
  Fly   280 ---------------DGN--------------SVKSGSTSDMSGLSKKQ-----------RKART 304

  Fly   430 ILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKK 481
            ..|..|.:..:.||::......:.|:.||....||...|:.|:||:|.|.|:
  Fly   305 AFTDHQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKR 356

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	11/51 (22%)
		LIM	333..388	CDD:295319	2/54 (4%)
		Homeobox	427..480	CDD:278475	17/52 (33%)
B-H1	NP_523387.1	Homeobox	303..355	CDD:278475	17/51 (33%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910