Protein Alignment Lmx1a and B-H2

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_523386.1
• Gene: B-H2 / 32723
• FlyBaseID: FBgn0004854
• Length: 645
• Species: Drosophila melanogaster
• Alignment Length: 479
• Identity: 90/479 - (18%)
• Similarity: 128/479 - (26%)
• Gaps: 250/479 - (52%)

  Fly    44 GNSLHLSNSNNNLPTSISGNNSPTATASLTGQHQQHQQQQHQQQQQHPHQQHQQ----------- 97
            ||:.:   :::.:|..:..:..|...|.|      .||||.||||||||..|.|
  Fly   168 GNNPY---AHHPMPPHLLAHFPPAHYAVL------QQQQQQQQQQQHPHPHHLQLERERLEALHR 223

  Fly    98 --------------------HQQQHAASTTPVPINSCPTPTGHSPLSSSSSNS----------NH 132
                                |||.|              |..|.|:....|.|          ..
  Fly   224 HGHGLTGDPAQHLSHLSHLSHQQHH--------------PHLHHPMHDERSRSPLMLQQLGGNGG 274

  Fly   133 NNNNNNNNGGSSSNNLHSACNTLTAAAVAAASAAAVAAPSPAGTSVATSQLGGAVAAAIAAAAAA 197
            ||||||||..|:|||.::..|:      |:|::..:
  Fly   275 NNNNNNNNSSSASNNNNNNNNS------ASANSNII----------------------------- 304

  Fly   198 AAAATTPTSTGPAATGSGNANGSGNGNGNGNGNGNGNGNGNGGGAATASAAAASKLSADCSGRTE 262
                            |||::.|.|.||:||||....|.|:......||....|. |.||.|:.:
  Fly   305 ----------------SGNSSSSNNNNGSGNGNMLLGGPGSSISGDQASTIDDSD-SDDCGGKDD 352

  Fly   263 VGHIKCEKNFELCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYD 327
            .|                   |..:.|...||
  Fly   353 DG-------------------DDSMKNGSSAN--------------------------------- 365

  Fly   328 RLFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEK 392
                                                                        .|...
  Fly   366 ------------------------------------------------------------GDSSS 370

  Fly   393 EMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREAL 457
            .:.|:.:..|                      ::.||..|..|.:..:.||::......:.|..|
  Fly   371 HLSLSLSKKQ----------------------RKARTAFTDHQLQTLEKSFERQKYLSVQDRMEL 413

  Fly   458 AKDTGLSVRVVQVWFQNQRAKMKK 481
            |....||...|:.|:||:|.|.|:
  Fly   414 ANKLELSDCQVKTWYQNRRTKWKR 437

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	4/51 (8%)
		LIM	333..388	CDD:295319	0/54 (0%)
		Homeobox	427..480	CDD:278475	17/52 (33%)
B-H2	NP_523386.1	Homeobox	384..436	CDD:278475	17/51 (33%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910