Protein Alignment Lmx1a and Lim1

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_572505.1
• Gene: Lim1 / 31813
• FlyBaseID: FBgn0026411
• Length: 505
• Species: Drosophila melanogaster
• Alignment Length: 331
• Identity: 109/331 - (32%)
• Similarity: 147/331 - (44%)
• Gaps: 108/331 - (32%)

  Fly   259 GRTE----VGHIKCEKNFELCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSK 319
            ||:|    ||        :.|.||.:.|.|:||:||.:..||..|:.||.|...|...|:.|.||
  Fly    15 GRSEPPVGVG--------DPCAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESK 71

  Fly   320 LYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQ-FMLRDGQL 383
            |||:.|:.|.:|.|||.|...|.|.:||.:| .:.||||.||.|..||..|..||| ::|.|.:.
  Fly    72 LYCRNDFFRRYGTKCSGCGQGIAPSDLVRKP-RDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKF 135

  Fly   384 FCYRHDLEKEMFLAAAAAQHCGFVGL------------DEED------------LLRPR------ 418
            .|      |:.:|...|.. ||...|            |::|            :|.|.
  Fly   136 IC------KDDYLLGKAPS-CGHNSLSDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAG 193

  Fly   419 ---------------------------------DGR-------------RGPKR--PRTILTSQQ 435
                                             |||             .|.||  |||.:.::|
  Fly   194 GPLGTSDISVQSMSTDSKNTHDDSDQGSLDGDPDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQ 258

  Fly   436 RKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSG-----GG 495
            .:..|.:|:|:|||.|.:||.|||:|||.:||:||||||:|:|    :|:.||....|     ||
  Fly   259 LEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSK----ERRMKQITSMGRPPFFGG 319

  Fly   496 SGSGRG 501
            :...||
  Fly   320 ARKMRG 325

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	24/51 (47%)
		LIM	333..388	CDD:295319	25/55 (45%)
		Homeobox	427..480	CDD:278475	29/52 (56%)
Lim1	NP_572505.1	LIM1_Lhx1_Lhx5	27..78	CDD:188753	23/50 (46%)
		LIM2_Lhx1_Lhx5	86..141	CDD:188761	25/61 (41%)
		COG5576	185..324	CDD:227863	42/142 (30%)
		Homeobox	250..303	CDD:278475	29/56 (52%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45444993
Domainoid	1	1.000	47	0.796	Domainoid score	I4515
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR24208
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	4	3.940