Protein Alignment Lmx1a and Vsx2

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_001284897.1
• Gene: Vsx2 / 31469
• FlyBaseID: FBgn0263512
• Length: 645
• Species: Drosophila melanogaster
• Alignment Length: 523
• Identity: 112/523 - (21%)
• Similarity: 163/523 - (31%)
• Gaps: 190/523 - (36%)

  Fly   183 LGGAVAAA------IAAAAAAAAAATTPTSTGPAATGSGNANGSGNGNGNGNGNGNGNGNGNGGG 241
            ||.|||||      :...|.|..|....|.|.|..|                       |.....
  Fly    13 LGLAVAAATEAPTDLTTTAGATVAKERQTPTPPKTT-----------------------NATMAT 54

  Fly   242 AATASAAAASKLSADCSGRTEVGHIKCEKNFELCEGCGQKIHDRFLMNVGDANWHEQCLACCYCG 306
            |||::|.||:..:|.....|.|...:.:...:..|   |:.|
  Fly    55 AATSAATAATPTNAAEGNLTSVSEPQQQPQQQQQE---QQHH----------------------- 93

  Fly   307 MQLHHTCYVRNSKL----YCKMDYDRLFGVKCSSCCHAILPQELVMR------------------ 349
             |.||..|..:.::    ..:|.|   |... ::...|.:|.:|...
  Fly    94 -QPHHHQYREHHQMTMAAASRMAY---FNAH-AAVAAAFMPHQLAAAVHHHHQHQHQHHPHHHPH 153

  Fly   350 ----------PIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAAAAQHC 404
                      |.|....|.|    :....||...:.|    .||..:           ||.|..|
  Fly   154 HPHGAVGGPPPPPPMQHHHP----HHPHHPLLHAQGF----PQLKSF-----------AAGAGTC 199

  Fly   405 GFVGLDEEDL---------LRPRDGRRGPKR--PRTILTSQQRKQFKASFDQSPKPCRKVREALA 458
            ....|..:|.         :.|...::..||  .|||.||.|.::.:.:|.::..|....||.|:
  Fly   200 LPGSLAPKDFGMESLNGFGVGPNSKKKKKKRRHSRTIFTSYQLEKLEEAFKEAHYPDVYAREMLS 264

  Fly   459 KDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSGGGSGSG------------RGTGNSSATDDK 511
            ..|.|....:||||||:|||.:|.:   |..|||...:..|            ..|...||.|
  Fly   265 LKTELPEDRIQVWFQNRRAKWRKTE---KVWGGSTIMAEYGLYGAMVRHSLPLPDTILKSAKD-- 324

  Fly   512 DTND--------KEDKCVKQELGGDSSGYLGGLDSTFASQPLNPNLPFSPDDYPANSNDSFCSSD 568
              ||        .|.||:.::             |..|...|..:...|..:..|.|..:. |.|
  Fly   325 --NDAVAPWLLGMEQKCMHRK-------------SIEAQSALKDDSGVSDHEDSAGSKSAH-SED 373

  Fly   569 LSLDGSNFDQLDDDADSLSL-------------------------NNLELQSTSSSGNQHSHSHS 608
            ||  .|....|....:||::                         ......:|:.:|...::|.|
  Fly   374 LS--RSRCHALSSSTESLNVVSPAPSSCPTSASTSAPPTSTSGYAGAASSAATTPTGASTTNSSS 436

  Fly   609 NPH 611
            :||
  Fly   437 SPH 439

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	8/55 (15%)
		LIM	333..388	CDD:295319	12/82 (15%)
		Homeobox	427..480	CDD:278475	22/52 (42%)
Vsx2	NP_001284897.1	Homeobox	233..286	CDD:278475	22/52 (42%)
		OAR	556..570	CDD:281777

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910