Protein Alignment Lmx1a and Lhx6

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_001101307.2
• Gene: Lhx6 / 311901
• RGDID: 1306174
• Length: 392
• Species: Rattus norvegicus
• Alignment Length: 321
• Identity: 103/321 - (32%)
• Similarity: 149/321 - (46%)
• Gaps: 31/321 - (9%)

  Fly   169 AAPS-PAGTSVATSQLGGAVAAAIAAAAAAAAAATTP--TSTGPAATGSGNANGSGNGNGNGNGN 230
            |||: |.|..:...  ||.....:.|...:...|||.  ..|.|.|....:|...........|.
  Rat     8 AAPALPEGCRLPAE--GGPTTDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGR 70

  Fly   231 GNGNGNGNGGGAATASAAAASKLSADCSGRTEVGHIKCEKNFELCEGCGQKIHDRFLMNVGDANW 295
            .:..........:..|||:    |...:|:            .:|..||.:|.||:|:.|.:..|
  Rat    71 ASPCTPSTPSVCSPPSAAS----SVPSAGK------------NICSSCGLEILDRYLLKVNNLIW 119

  Fly   296 HEQCLACCYC--GMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFHL 358
            |.:||.|..|  .::..::||::|.::||||||...||.||:.|...|...:.|.|...| .:||
  Rat   120 HVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGN-AYHL 183

  Fly   359 PCFVCYACRLPLQKGEQFMLRDGQLFCYRH-DLEKEMFLAAAAAQHCGFVGLDEEDLL-RPRDGR 421
            .||.|::|:..|..||:|.|.:.::.|..| |...|....||...:    ||..|..: ..:|.:
  Rat   184 ACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGN----GLTLEGAVPSEQDSQ 244

  Fly   422 RGP-KRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKK 481
            ..| ||.||..|::|.:..:|.|.|...|..:..:.||..||||.||:||||||.||:.||
  Rat   245 PKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	22/53 (42%)
		LIM	333..388	CDD:295319	19/54 (35%)
		Homeobox	427..480	CDD:278475	24/52 (46%)
Lhx6	NP_001101307.2	LIM1_Lhx6	99..152	CDD:188766	21/52 (40%)
		LIM2_Lhx6	160..214	CDD:188768	18/54 (33%)
		Homeobox	252..305	CDD:395001	24/52 (46%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910