Protein Alignment Lmx1a and Nkx2-3

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_001101064.1
• Gene: Nkx2-3 / 309389
• RGDID: 1308521
• Length: 362
• Species: Rattus norvegicus
• Alignment Length: 227
• Identity: 58/227 - (25%)
• Similarity: 83/227 - (36%)
• Gaps: 66/227 - (29%)

  Fly    72 LTGQHQQHQQQQHQQQQQH---PHQQH------------------------QQHQQQ------HA 103
            |..|.|..:.::..:||::   |.::|                        :|.|.:      ||
  Rat   151 LFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGTHA 215

  Fly   104 ASTTP----VPI-----NSCPTPTGH---SPLSSSSSNSNHNNNNNNNNGGSSSNNLHSACNTLT 156
            ....|    ||:     ..|.||:..   ||....:...::|:......|.|
  Rat   216 PPPPPRRVAVPVLVRDGKPCVTPSAQAYGSPYGVGAGAYSYNSFPAYGYGNS------------- 267

  Fly   157 AAAVAAASAAAVAAPSPAGTSVATSQLGGAVAAAIAAAAAAAAAATTPTSTGPAATGSGNANGSG 221
            |||.|||:|||.||.:.:|:.......||.     .....||:||||......:|||.|:....|
  Rat   268 AAAAAAAAAAAAAAAAYSGSYGCAYPTGGG-----GGGGGAASAATTAMQPACSATGGGSFVNVG 327

  Fly   222 NGNGNGNGNGNGNGNGNGGGAATASAAAASKL 253
            |..|.|:|   |.......|||..:|.|...|
  Rat   328 NLGGFGSG---GGAQPLHQGAAAGAACAQGTL 356

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757
		LIM	333..388	CDD:295319
		Homeobox	427..480	CDD:278475
Nkx2-3	NP_001101064.1	Homeobox	148..202	CDD:395001	7/50 (14%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910