Protein Alignment Lmx1a and hoxb1a

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_571190.2
• Gene: hoxb1a / 30337
• ZFINID: ZDB-GENE-990415-101
• Length: 316
• Species: Danio rerio
• Alignment Length: 386
• Identity: 83/386 - (21%)
• Similarity: 121/386 - (31%)
• Gaps: 146/386 - (37%)

  Fly   208 GPAATGSGNANGSGNGNGN---GNGN-----------GNG--------NGNGNG---GGAATASA 247
            ||..|  |:|:.|.|.:|.   |..|           .||        |..|.|   ||..|.|.
Zfish    37 GPFHT--GHASDSYNADGRLYVGGSNQPPTAAAQHQHQNGIYAHHQHQNQTGMGLTYGGTGTTSY 99

  Fly   248 AAASKLSADCSGRTEVGHIKCEKNFELCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQ---- 308
            ...:     |:......|    :.|...|..|...|... .:..:|:.|...:|..|||.|
Zfish   100 GTQA-----CANSDYAQH----QYFINPEQDGMYYHSSG-FSTSNASPHYGSMAGAYCGAQGAVP 154

  Fly   309 ----LHHTCYVRNSKLYCKMDYDRLFGVKCSSCCHAIL-----PQELVMRPIPNFVFHLPCFVCY 364
                .||.|.        ..|:.|.:    |...:|.|     .::...:|.|...|
Zfish   155 AAPYQHHGCE--------GQDHQRAY----SQGTYADLSASQGTEKDTDQPPPGKTF-------- 199

  Fly   365 ACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRP-R 428
                ...|.::...:.|::..|                     ||             ||:.. |
Zfish   200 ----DWMKVKRNPPKTGKVAEY---------------------GL-------------GPQNTIR 226

  Fly   429 TILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSG 493
            |..|::|..:.:..|..|....|..|..:|....|:...|::||||:|.|.||.:::
Zfish   227 TNFTTKQLTELEKEFHFSKYLTRARRVEIAATLELNETQVKIWFQNRRMKQKKREKE-------- 283

  Fly   494 GGSGSGRGTGNSSATDDKDTNDKEDKCVKQELGGDSSGYLGGLDSTFASQPLNPNLPFSPD 554
                   |...:|:|..||..|:.|                  .||..|...:|    |||
Zfish   284 -------GLAPASSTSSKDLEDQSD------------------HSTSTSPEASP----SPD 315

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	14/59 (24%)
		LIM	333..388	CDD:295319	9/59 (15%)
		Homeobox	427..480	CDD:278475	17/53 (32%)
hoxb1a	NP_571190.2	Homeobox	226..278	CDD:278475	17/51 (33%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910