DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lmx1a and lmo2

DIOPT Version :10

Sequence 1:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_571186.1 Gene:lmo2 / 30332 ZFINID:ZDB-GENE-980526-419 Length:159 Species:Danio rerio


Alignment Length:126 Identity:45/126 - (35%)
Similarity:67/126 - (53%) Gaps:11/126 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   275 CEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHT---CYVRNSKLYCKMDYDRLFGVK--C 334
            |.||.|.|.|||.:...:..|||.||:|..||.:|...   .|.:..:..|:.||.||||..  |
Zfish    30 CGGCQQSIGDRFFLKAIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLC 94

  Fly   335 SSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMF 395
            :||...|...|:.|| :.:.|:||.||.|.||:.....|::::|.:..:.|     |:::|
Zfish    95 ASCEKRIRAFEMTMR-VRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVC-----EQDIF 149

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757 20/54 (37%)
LIM 333..388 CDD:413332 18/56 (32%)
Homeodomain 425..481 CDD:459649
lmo2NP_571186.1 LIM1_LMO2 30..85 CDD:188770 20/54 (37%)
LIM2_LMO2 94..149 CDD:188771 19/60 (32%)
Blue background indicates that the domain is not in the aligned region.

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