DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lmx1a and Lmx1a

DIOPT Version :9

Sequence 1:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001099437.2 Gene:Lmx1a / 289201 RGDID:1304784 Length:382 Species:Rattus norvegicus


Alignment Length:413 Identity:165/413 - (39%)
Similarity:215/413 - (52%) Gaps:75/413 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   266 IKCEKNFE---------------------LCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQL 309
            :|.|:||:                     :||||.:.|.||||:.:.|:.|||||:.|..|...|
  Rat     5 LKMEENFQSAIETSASFSSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQCVQCASCKEPL 69

  Fly   310 HHTCYVRNSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGE 374
            ..||:.|:.|||||..|::||.|||..|..||.|.|.||| ....|:||.||.|..|...||||:
  Rat    70 ETTCFYRDKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMR-AQKSVYHLSCFCCCVCERQLQKGD 133

  Fly   375 QFMLRDGQLFCYRHDLEKE---MFLAAAAAQHCGFVGLDEEDLLR---------PRDGR--RGPK 425
            :|:|::|||.| :.|.|||   :.|.:.||...| ...|||.|.:         ..||:  :.||
  Rat   134 EFVLKEGQLLC-KGDYEKERELLSLVSPAASDSG-KSDDEESLCKSAHGAGKGASEDGKDHKRPK 196

  Fly   426 RPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNG 490
            |||||||:|||:.|||||:.|.||||||||.||.:|||||||||||||||||||||:.|:.:|..
  Rat   197 RPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRQQQQQ 261

  Fly   491 GSGGGS---GSGRGTGNSSATDDKDTNDKEDKCVKQELGGDSSGYLGGLDSTFASQPLNPNLPFS 552
            .....:   .|.:..|:.:|..:...|........|:|       |....|.:.|.|....|  :
  Rat   262 QDQQNTQRLSSAQTNGSGNAGMEGIMNPYTTLPTPQQL-------LAIEQSVYNSDPFRQGL--T 317

  Fly   553 PDDYPANSNDSFCSSDLSLDGSNFDQLDDDADSLSLNNLE--LQSTSSSGNQHSHSHSNPHDMLA 615
            |...|.:....:.:..|      |..|  |:|..||:||.  ..:||.:|               
  Rat   318 PPQMPGDHMHPYGAEPL------FHDL--DSDDTSLSNLGDCFLATSEAG--------------- 359

  Fly   616 NLNNSLINPIDKLYLMQNSYFSS 638
            .|.:.:.||||.||.||||||:|
  Rat   360 PLQSRVGNPIDHLYSMQNSYFTS 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757 26/51 (51%)
LIM 333..388 CDD:295319 27/54 (50%)
Homeobox 427..480 CDD:278475 43/52 (83%)
Lmx1aNP_001099437.2 LIM1_Lmx1a 35..86 CDD:188756 26/50 (52%)
LIM2_Lmx1a_Lmx1b 94..148 CDD:188764 25/56 (45%)
Homeobox 198..252 CDD:395001 26/56 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 74 1.000 Domainoid score I8924
eggNOG 1 0.900 - - E33208_3BAC6
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 249 1.000 Inparanoid score I3159
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D323174at33208
OrthoFinder 1 1.000 - - FOG0001820
OrthoInspector 1 1.000 - - otm46005
orthoMCL 1 0.900 - - OOG6_105498
Panther 1 1.100 - - LDO PTHR24208
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1182
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.830

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