Sequence 1: | NP_729801.1 | Gene: | Lmx1a / 39406 | FlyBaseID: | FBgn0052105 | Length: | 640 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001099437.2 | Gene: | Lmx1a / 289201 | RGDID: | 1304784 | Length: | 382 | Species: | Rattus norvegicus |
Alignment Length: | 413 | Identity: | 165/413 - (39%) |
---|---|---|---|
Similarity: | 215/413 - (52%) | Gaps: | 75/413 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 266 IKCEKNFE---------------------LCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQL 309
Fly 310 HHTCYVRNSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGE 374
Fly 375 QFMLRDGQLFCYRHDLEKE---MFLAAAAAQHCGFVGLDEEDLLR---------PRDGR--RGPK 425
Fly 426 RPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNG 490
Fly 491 GSGGGS---GSGRGTGNSSATDDKDTNDKEDKCVKQELGGDSSGYLGGLDSTFASQPLNPNLPFS 552
Fly 553 PDDYPANSNDSFCSSDLSLDGSNFDQLDDDADSLSLNNLE--LQSTSSSGNQHSHSHSNPHDMLA 615
Fly 616 NLNNSLINPIDKLYLMQNSYFSS 638 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lmx1a | NP_729801.1 | LIM1_Lmx1b | 275..327 | CDD:188757 | 26/51 (51%) |
LIM | 333..388 | CDD:295319 | 27/54 (50%) | ||
Homeobox | 427..480 | CDD:278475 | 43/52 (83%) | ||
Lmx1a | NP_001099437.2 | LIM1_Lmx1a | 35..86 | CDD:188756 | 26/50 (52%) |
LIM2_Lmx1a_Lmx1b | 94..148 | CDD:188764 | 25/56 (45%) | ||
Homeobox | 198..252 | CDD:395001 | 26/56 (46%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 74 | 1.000 | Domainoid score | I8924 |
eggNOG | 1 | 0.900 | - | - | E33208_3BAC6 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 249 | 1.000 | Inparanoid score | I3159 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D323174at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001820 | |
OrthoInspector | 1 | 1.000 | - | - | otm46005 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_105498 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR24208 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X1182 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
13 | 12.830 |