Protein Alignment Lmx1a and Lhx9

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: XP_006249976.1
• Gene: Lhx9 / 289048
• RGDID: 727956
• Length: 397
• Species: Rattus norvegicus
• Alignment Length: 301
• Identity: 95/301 - (31%)
• Similarity: 130/301 - (43%)
• Gaps: 63/301 - (20%)

  Fly   274 LCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHH--TCYVRNSKLYCKMDYDRLFGV-KCS 335
            ||.|||.||.||:.:...|..||.:||.||.|.:.|..  ||:.::..:|||.||.|.|.| :|:
  Rat    70 LCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCA 134

  Fly   336 SCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRH-------DLEKE 393
            .|...|...|:||| ..:.|:||.||.|..|...|..|:.|.::|..::|..|       :...:
  Rat   135 RCHLGISASEMVMR-ARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQ 198

  Fly   394 MFLAAAAAQHCG-----FVGLDEEDLLRPRDGRRGP----------------------------- 424
            :.....||:..|     |.|.......|||. |:.|
  Rat   199 LSYTELAAKSGGLALPYFNGTGTVQKGRPRK-RKSPALGVDIVNYNSGCNENEADHLDRDQQPYP 262

  Fly   425 -----KRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 484
                 ||.||.....|.:..|:.|..:..|..|..:.||:.|||:.||:||||||.|||.:: ..
  Rat   263 PSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR-NL 326

  Fly   485 KAKQNGGSGGGSG----------SGRGTGNSSATDDKD-TN 514
            ..::|||.....|          ||..|...:||...| ||
  Rat   327 LRQENGGVDKADGTSLPAPPSADSGALTPPGTATTLTDLTN 367

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	23/53 (43%)
		LIM	333..388	CDD:295319	19/54 (35%)
		Homeobox	427..480	CDD:278475	23/52 (44%)
Lhx9	XP_006249976.1	LIM1_Lhx2	61..124	CDD:188853	23/53 (43%)
		LIM2_Lhx2_Lhx9	129..187	CDD:188763	20/58 (34%)
		Homeobox	271..324	CDD:395001	23/52 (44%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910