DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment Lmx1a and lmo1

DIOPT Version :9

Sequence 1:	NP_729801.1	Gene:	Lmx1a / 39406	FlyBaseID:	FBgn0052105	Length:	640	Species:	Drosophila melanogaster
Sequence 2:	XP_021333063.1	Gene:	lmo1 / 280646	ZFINID:	ZDB-GENE-021115-6	Length:	179	Species:	Danio rerio

Alignment Length:	116	Identity:	46/116 - (39%)
Similarity:	65/116 - (56%)	Gaps:	6/116 - (5%)

- Green bases have known domain annotations that are detailed below.

  Fly   275 CEGCGQKIHDRFLMNVGDANWHEQCL--ACCYCGM-QLHHTCYVRNSKLYCKMDYDRLFGV--KC 334
            |.||.:||.||:|:...|..|||.||  |||.|.: ::..|.|.:.:.:.|:.||.||||.  .|
Zfish    47 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNC 111

  Fly   335 SSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFC 385
            ::|...|...|:|||...| |:||.||.|..|......|::|.|::..:.|
Zfish   112 AACSKLIPAFEMVMRARDN-VYHLDCFACQLCNQRFCVGDKFFLKNNMILC 161

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	22/54 (41%)
		LIM	333..388	CDD:295319	19/53 (36%)
		Homeobox	427..480	CDD:278475
lmo1	XP_021333063.1	LIM1_LMO1_LMO3	47..101	CDD:188774	21/53 (40%)
lmo1	XP_021333063.1	LIM2_LMO1_LMO3	111..165	CDD:188775	19/52 (37%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910