DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lmx1a and phx1

DIOPT Version :10

Sequence 1:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_593776.1 Gene:phx1 / 2542405 PomBaseID:SPAC32A11.03C Length:942 Species:Schizosaccharomyces pombe


Alignment Length:232 Identity:53/232 - (22%)
Similarity:92/232 - (39%) Gaps:27/232 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   417 PRDG--RRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKM 479
            |..|  ...||..:..||:.|.......|.:...|...:||.:.::..:..|.|.:||||:|||.
pombe   157 PESGGSTSAPKSKKQRLTADQLAYLLREFSKDTNPPPAIREKIGRELNIPERSVTIWFQNRRAKS 221

  Fly   480 KKIQRKAKQNGGSGGGSGSGRGTGNSSATDDKDTNDKEDKCVKQELGGDS--SGYLGGL------ 536
            |.|.|:.::.          |........:....|.|..:....|:...|  |.|:||:      
pombe   222 KLISRRQEEE----------RQRILREQRELDSLNQKVSQAFAHEVLSTSPTSPYVGGIAANRQY 276

  Fly   537 DSTFASQPLNPNLPFSPDDYPANSNDSFC--SSDL----SLDGSNFDQLDDDADSLSLNNLELQS 595
            .:|...:|......|.....|..|:...|  .||:    ||..:.::.|..:|..:| :..:..:
pombe   277 ANTLLPKPTRKTGNFYMKSGPMQSSMEPCIAESDIPIRQSLSSTYYNSLSPNAVPVS-SQRKYSA 340

  Fly   596 TSSSGNQHSHSHSNPHDMLANLNNSLINPIDKLYLMQ 632
            :|.|...::.|.||....:.:..:|...|:..:.:.|
pombe   341 SSYSAIPNAMSVSNQAFDVESPPSSYATPLTGIRMPQ 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757
LIM 333..388 CDD:413332
Homeodomain 425..481 CDD:459649 17/55 (31%)
phx1NP_593776.1 COG5576 116..272 CDD:227863 32/124 (26%)
Blue background indicates that the domain is not in the aligned region.

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