Sequence 1: | NP_729801.1 | Gene: | Lmx1a / 39406 | FlyBaseID: | FBgn0052105 | Length: | 640 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006497809.1 | Gene: | Lmx1b / 16917 | MGIID: | 1100513 | Length: | 408 | Species: | Mus musculus |
Alignment Length: | 387 | Identity: | 155/387 - (40%) |
---|---|---|---|
Similarity: | 207/387 - (53%) | Gaps: | 61/387 - (15%) |
- Green bases have known domain annotations that are detailed below.
Fly 274 LCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSCC 338
Fly 339 HAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEM-FLAAAAAQ 402
Fly 403 HCGFVGLDEED-LLRPRDGR--------------RGPKRPRTILTSQQRKQFKASFDQSPKPCRK 452
Fly 453 VREALAKDTGLSVRVVQVWFQNQRAKMKKI-----QRKAKQNGGSGGGSG-SGRGTGNSSATDDK 511
Fly 512 DTNDKEDKCVKQELGGDSSGYLGGLDSTFASQPLNPNLPFSPDDYPANSNDSFCSSDLSLDGSNF 576
Fly 577 DQLDDDADSLSLNNLELQSTSSSGNQHSHSHSNPHDMLANLNNSLINPIDKLYLMQNSYFSS 638 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lmx1a | NP_729801.1 | LIM1_Lmx1b | 275..327 | CDD:188757 | 28/51 (55%) |
LIM | 333..388 | CDD:295319 | 26/54 (48%) | ||
Homeobox | 427..480 | CDD:278475 | 43/52 (83%) | ||
Lmx1b | XP_006497809.1 | LIM1_Lmx1b | 62..114 | CDD:188757 | 28/51 (55%) |
LIM2_Lmx1a_Lmx1b | 121..175 | CDD:188764 | 25/55 (45%) | ||
Homeobox | 228..282 | CDD:365835 | 44/53 (83%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 74 | 1.000 | Domainoid score | I9112 |
eggNOG | 1 | 0.900 | - | - | E33208_3BAC6 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 1 | 0.950 | - | 0 | Normalized mean entropy | S3240 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D323174at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001820 | |
OrthoInspector | 1 | 1.000 | - | - | otm43918 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_105498 | |
Panther | 1 | 1.100 | - | - | O | PTHR24208 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R3844 |
SonicParanoid | 1 | 1.000 | - | - | X1182 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
13 | 12.760 |