Protein Alignment Lmx1a and Lhx3

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_001034742.1
• Gene: Lhx3 / 16871
• MGIID: 102673
• Length: 402
• Species: Mus musculus
• Alignment Length: 345
• Identity: 108/345 - (31%)
• Similarity: 164/345 - (47%)
• Gaps: 67/345 - (19%)

  Fly   270 KNFELCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKC 334
            :...:|.||.|.|.|||::...|.:||.:||.|..|.:.|...|:.|...:|||.|:.:.||.||
Mouse    31 REIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKC 95

  Fly   335 SSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQF-MLRDGQLFCYRHDLEKEMFLAA 398
            ::|...|.|.::|.| ..:||:||.||.|..|:..|..|::| ::.|.:|.| :.|.|
Mouse    96 AACQLGIPPTQVVRR-AQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVC-KADYE------- 151

  Fly   399 AAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGL 463
                           ..:.|:.....|||||.:|::|.:..|::::.||||.|.|||.|:.:|||
Mouse   152 ---------------TAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGL 201

  Fly   464 SVRVVQVWFQNQRAKMKKIQRKA-KQNGG--------SGGGSGSGRGT--------GNSSATDDK 511
            .:|||||||||:|||.|::::.| :|..|        |.|.|.|.:.:        ...|.||:.
Mouse   202 DMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGSSKSDKDSIQEGQDSDAEVSFTDEP 266

  Fly   512 DTND------------KEDKCVKQELGGDSSGYL--GGLDSTFASQPLNPNLPFS---------- 552
            ...|            :....:.:.:||..|..|  |||......:.|.|..|:.
Mouse   267 SMADMGPANGLYSSLGEPAPALGRPVGGLGSFTLDHGGLTGPEQYRELRPGSPYGIPPSPAAPQS 331

  Fly   553 -PDDYPANSNDSFCSSDLSL 571
             |...|..|:..:..::|||
Mouse   332 LPGPQPLLSSLVYPDTNLSL 351

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	22/51 (43%)
		LIM	333..388	CDD:295319	21/55 (38%)
		Homeobox	427..480	CDD:278475	30/52 (58%)
Lhx3	NP_001034742.1	LIM1_Lhx3b	33..87	CDD:188851	21/53 (40%)
		LIM2_Lhx3_Lhx4	95..150	CDD:188762	20/56 (36%)
		Homeobox	165..218	CDD:278475	30/52 (58%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910