DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lmx1a and Isl1

DIOPT Version :10

Sequence 1:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_067434.3 Gene:Isl1 / 16392 MGIID:101791 Length:349 Species:Mus musculus


Alignment Length:347 Identity:107/347 - (30%)
Similarity:157/347 - (45%) Gaps:64/347 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   267 KCEKNFELCEGCGQKIHDRFLMNVG-DANWHEQCLACCYCGMQLHH--TCYVRNSKLYCKMDYDR 328
            |.::...||.|||.:|||::::.|. |..||..||.|..|...|..  ||:||:.|.|||.||.|
Mouse     9 KKKRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 73

  Fly   329 LFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYR-HDLEK 392
            |:|:||:.|.......:.||| ..:.|:|:.||.|.||...|..|::|.||:..|||.. ||:.:
Mouse    74 LYGIKCAKCSIGFSKNDFVMR-ARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVE 137

  Fly   393 EMFLAAA--------------AAQHCGFVGLDEEDLLRPRDGRRGPK--RPRTILTSQQRKQFKA 441
            ...|.|.              ||:...    ..:..|||...::..|  |.||:|..:|....:.
Mouse   138 RASLGAGDPLSPLHPARPLQMAAEPIS----ARQPALRPHVHKQPEKTTRVRTVLNEKQLHTLRT 198

  Fly   442 SFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAK-------MKKIQR-----KAKQNGGSGG 494
            .:..:|:|...::|.|.:.||||.||::|||||:|.|       ||::|:     |....|.:|.
Mouse   199 CYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIMMKQLQQQQPNDKTNIQGMTGT 263

  Fly   495 ---GSGSGRGTGNSSAT--------------DDKDTNDKEDKCVKQEL-----GGDSSGYLGGLD 537
               .:...|..|...|.              .|.......|:...|:|     ||..|...|...
Mouse   264 PMVAASPERHDGGLQANPVEVQSYQPPWKVLSDFALQSDIDQPAFQQLVNFSEGGPGSNSTGSEV 328

  Fly   538 STFASQPLNPNLPFSPDDYPAN 559
            ::.:||     ||.:|:...|:
Mouse   329 ASMSSQ-----LPDTPNSMVAS 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757 25/54 (46%)
LIM 333..388 CDD:413332 21/55 (38%)
Homeodomain 425..481 CDD:459649 24/64 (38%)
Isl1NP_067434.3 LIM1_Isl 17..71 CDD:188752 24/53 (45%)
LIM2_Isl 79..133 CDD:188760 20/54 (37%)
HOX 181..237 CDD:197696 22/55 (40%)
LIM-binding domain (LID) 262..291 4/28 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 312..349 10/39 (26%)

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