Protein Alignment Lmx1a and LOC100911668

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: XP_006257771.1
• Gene: LOC100911668 / 100911668
• RGDID: 6491746
• Length: 413
• Species: Rattus norvegicus
• Alignment Length: 523
• Identity: 88/523 - (16%)
• Similarity: 133/523 - (25%)
• Gaps: 227/523 - (43%)

  Fly    15 GGSLYSLQQNHGGARFLDNPNPGSMTASSGNSLHLSNSNNNLPTSISGN---------------- 63
            ||..|:    |||.......:......|.|....|.|..|..|:...|.
  Rat    53 GGGYYA----HGGVYLPPASDLPYGLQSCGLFPALGNKRNEAPSPGGGGGGGGGGLGPGAHGYAP 113

  Fly    64 -------NSPTATASLTGQHQQHQQQQHQQQQQHPHQQHQQHQQQHAASTTPVPINSCPTPTGHS 121
                   ::|.:............|.|.|||||.|                |.|    |.|....
  Rat   114 APLDLWLDAPRSCRMEPPDGPPPPQPQPQQQQQPP----------------PPP----PQPPQPP 158

  Fly   122 PLSSSSSNSNHNNNNNNNNGGSSSNNLHSACNTLTAAAVAAASAAAVAAPSPAGTSVATS----- 181
            |.::|.|.:       .|....||..|:.:.:.....:.||..|.....|.|.|.::..|
  Rat   159 PQATSCSFA-------QNIKEESSYCLYDSADKCPKGSAAADLAPFPRGPPPDGCALGASSGVPV 216

  Fly   182 ----QLGGAVAAAIAAAAAAAAAATTPTSTGPAATGSGNANGSGNGNGNGNGNGN---------- 232
                :|..|...|....:.......:|....|...|....:...:|:....|...
  Rat   217 PGYFRLSQAYGTAKGFGSGGTQQLASPFPAQPPGRGFDPPSALASGSAEAAGKERVLDSTPPPTL 281

  Fly   233 ---GNGNGNGGGAATASAAAASKLSADCSGRTE-------VGHIKCEKNFELCEGCGQKIHDRFL 287
               |.|:......|.||::||.:||...|..::       :|:.|.|
  Rat   282 VCAGGGSSQADEEAHASSSAAEELSPAPSENSKASPEKDSLGNSKSE------------------ 328

  Fly   288 MNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIP 352
               ..|||                        |..|....:    :|....|..|
  Rat   329 ---NAANW------------------------LTAKSGRKK----RCPYTKHQTL---------- 352

  Fly   353 NFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAAAAQHCGFVGLDEEDLLRP 417
                                                :||||...
  Rat   353 ------------------------------------ELEKEFLF--------------------- 360

  Fly   418 RDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKI 482
                      ...||.::|.:                  :::...|:.|.|::||||:|.|:||:
  Rat   361 ----------NMYLTRERRLE------------------ISRSVHLTDRQVKIWFQNRRMKLKKM 397

  Fly   483 QRK 485
            .|:
  Rat   398 NRE 400

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	5/51 (10%)
		LIM	333..388	CDD:295319	3/54 (6%)
		Homeobox	427..480	CDD:278475	12/52 (23%)
LOC100911668	XP_006257771.1	Homeobox	342..395	CDD:278475	19/151 (13%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910