Protein Alignment Lmx1a and hoxd13

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: XP_002935723.1
• Gene: hoxd13 / 100498102
• XenbaseID: XB-GENE-482320
• Length: 300
• Species: Xenopus tropicalis
• Alignment Length: 383
• Identity: 79/383 - (20%)
• Similarity: 126/383 - (32%)
• Gaps: 140/383 - (36%)

  Fly   141 GGSSSNNLHSACNTLTAAAVAAASAA------AVAAPSPAGTSVATSQLGGAVAAAIAAAAAAAA 199
            ||....:.:...|.|::.:|..:.::      |.:||..:|:               |.|.|...
 Frog    18 GGGEGPSSNQCRNFLSSPSVFGSPSSRTVPGLAYSAPDRSGS---------------ARAEATKE 67

  Fly   200 AATTPTSTGPAATGSGNANGSGNGNGNG-------NGNG------NGNGNGNGGG------AATA 245
            ..|.|.||||    ||.:.|.|...|||       :|.|      ..:.:.:.||      ...:
 Frog    68 GPTCPASTGP----SGPSLGYGYHFGNGYYSCRMSHGVGLQQNPLKSSSHASLGGFPVEKYMDVS 128

  Fly   246 SAAAASKLSADCSGRT-EVGHIKCEKN-FELCEG---------CGQKIHDRFLMNVGDANWHEQC 299
            ..|:.|..|.:.|.|. ||.:.:...| ::...|         .|:..|:.::...|..:|   .
 Frog   129 GLASTSVPSNEVSSRAKEVSYFQGYTNPYQHVPGYLDMVSTFSSGEPRHEAYISMEGYQSW---T 190

  Fly   300 LACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCY 364
            ||..:            |.::||..|..:                      .|:|         :
 Frog   191 LANGW------------NGQVYCPKDQSQ----------------------APHF---------W 212

  Fly   365 ACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRT 429
            ....|                                   |.|.|::.|:...|.||    :.|.
 Frog   213 KSSFP-----------------------------------GDVALNQADMCVYRRGR----KKRV 238

  Fly   430 ILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAK 487
            ..|..|.|:.:..:..:....:..|..::..|.||.|.|.:||||:|.|.|||..|.|
 Frog   239 PYTKLQLKELENEYAVNKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLK 296

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	11/60 (18%)
		LIM	333..388	CDD:295319	3/54 (6%)
		Homeobox	427..480	CDD:278475	16/52 (31%)
hoxd13	XP_002935723.1	HoxA13_N	11..129	CDD:372013	29/129 (22%)
		Homeobox	236..290	CDD:365835	16/53 (30%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910