Sequence 1: | NP_729801.1 | Gene: | Lmx1a / 39406 | FlyBaseID: | FBgn0052105 | Length: | 640 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_031755234.1 | Gene: | lmx1b.2 / 100497942 | XenbaseID: | XB-GENE-920041 | Length: | 374 | Species: | Xenopus tropicalis |
Alignment Length: | 388 | Identity: | 164/388 - (42%) |
---|---|---|---|
Similarity: | 212/388 - (54%) | Gaps: | 60/388 - (15%) |
- Green bases have known domain annotations that are detailed below.
Fly 273 ELCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSC 337
Fly 338 CHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEM-FLAAAAA 401
Fly 402 QHCGFVGLDEED---LLRPRDGRRGP---KRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKD 460
Fly 461 TGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSGGGS---GSGRGTGNSSATDDKDTND------- 515
Fly 516 ---KEDKCVKQELGGDSSGYLGGLDSTFASQPLNPNLPFSPDD--YPANSNDSFCSSDLSLDGSN 575
Fly 576 FDQLDDDADSLSLNNLELQSTSSSGNQHSHSHSNPHDMLANLNNSLINPIDKLYLMQNSYFSS 638 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lmx1a | NP_729801.1 | LIM1_Lmx1b | 275..327 | CDD:188757 | 28/51 (55%) |
LIM | 333..388 | CDD:295319 | 25/54 (46%) | ||
Homeobox | 427..480 | CDD:278475 | 42/52 (81%) | ||
lmx1b.2 | XP_031755234.1 | LIM1_Lmx1b | 27..79 | CDD:188757 | 28/51 (55%) |
LIM | 86..140 | CDD:413332 | 25/55 (45%) | ||
Homeobox | 184..238 | CDD:395001 | 43/53 (81%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 74 | 1.000 | Domainoid score | I8965 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H136689 | |
Inparanoid | 1 | 1.050 | 260 | 1.000 | Inparanoid score | I3038 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D323174at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001820 | |
OrthoInspector | 1 | 1.000 | - | - | otm49088 | |
Panther | 1 | 1.100 | - | - | O | PTHR24208 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R3844 |
SonicParanoid | 1 | 1.000 | - | - | X1182 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
11 | 11.100 |