DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lmx1a and lmx1b.2

DIOPT Version :9

Sequence 1:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster
Sequence 2:XP_031755234.1 Gene:lmx1b.2 / 100497942 XenbaseID:XB-GENE-920041 Length:374 Species:Xenopus tropicalis


Alignment Length:388 Identity:164/388 - (42%)
Similarity:212/388 - (54%) Gaps:60/388 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   273 ELCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSC 337
            |:|.|||..|.||||:.|.|.:|||.|:.|..|...|..|||.||.:||||.|||:||..||:||
 Frog    25 EVCAGCGNTISDRFLLRVNDRSWHECCVKCAACLQILSGTCYYRNRQLYCKEDYDKLFATKCNSC 89

  Fly   338 CHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEM-FLAAAAA 401
            ...:||.||:||.:.| |:|:.||.|..|...|::|::|:|::|||.| |.|.|:|. .|:|.:.
 Frog    90 LKTVLPSELIMRVLSN-VYHVACFFCCECERRLERGDEFVLKEGQLLC-RSDYEREKEMLSALSL 152

  Fly   402 QHCGFVGLDEED---LLRPRDGRRGP---KRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKD 460
            ...|.|..::||   |....|..:.|   ||||||||:|||:.|||||:.|.||||||||.||.:
 Frog   153 TPSGSVKSEDEDGASLQGKSDEGKDPKRSKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAE 217

  Fly   461 TGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSGGGS---GSGRGTGNSSATDDKDTND------- 515
            |||:||||||||||||||||||.|:.:|......|:   ||.||...||...:.|:.|       
 Frog   218 TGLTVRVVQVWFQNQRAKMKKIARRQQQQDHEQLGAQRLGSSRGNRGSSRQSNDDSEDGGSGIEG 282

  Fly   516 ---KEDKCVKQELGGDSSGYLGGLDSTFASQPLNPNLPFSPDD--YPANSNDSFCSSDLSLDGSN 575
               ...:..:|.|..|.|.|    .:....|.|.|  |..|.|  :|.::...|           
 Frog   283 VMVPYPRIHQQMLALDQSNY----STDLYRQGLTP--PQMPGDHLHPYDAESVF----------- 330

  Fly   576 FDQLDDDADSLSLNNLELQSTSSSGNQHSHSHSNPHDMLANLNNSLINPIDKLYLMQNSYFSS 638
               .|.|::|||..:..|...|.:||..|.                :.|||:||.||.|||:|
 Frog   331 ---HDMDSESLSYLSGSLLPASETGNIQSR----------------VGPIDRLYSMQTSYFAS 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757 28/51 (55%)
LIM 333..388 CDD:295319 25/54 (46%)
Homeobox 427..480 CDD:278475 42/52 (81%)
lmx1b.2XP_031755234.1 LIM1_Lmx1b 27..79 CDD:188757 28/51 (55%)
LIM 86..140 CDD:413332 25/55 (45%)
Homeobox 184..238 CDD:395001 43/53 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 74 1.000 Domainoid score I8965
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H136689
Inparanoid 1 1.050 260 1.000 Inparanoid score I3038
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D323174at33208
OrthoFinder 1 1.000 - - FOG0001820
OrthoInspector 1 1.000 - - otm49088
Panther 1 1.100 - - O PTHR24208
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3844
SonicParanoid 1 1.000 - - X1182
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.100

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