Protein Alignment Lmx1a and nobox

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: XP_031761569.1
• Gene: nobox / 100494031
• XenbaseID: XB-GENE-22068768
• Length: 652
• Species: Xenopus tropicalis
• Alignment Length: 428
• Identity: 93/428 - (21%)
• Similarity: 155/428 - (36%)
• Gaps: 82/428 - (19%)

  Fly   213 GSGNANGSGNG-NGNGNGNGNGNG---NGNGGGAATASAA------------AASKLSADC---- 257
            |..:|..|||| ...||....|:.   :.:|...:..|:|            ..|:|::.|
 Frog     3 GVYSATVSGNGFVATGNALRVGSDPLPDSDGSLQSLVSSADSSSTLIAPIRPCRSRLTSTCGAAN 67

  Fly   258 ---SGRTEVGHIKCEK---NFELCEGCGQKIHDRFLMNVGDANWHEQCLAC----CYCGMQLHHT 312
               ..|.|.|..:.||   |       .::..|.....:|..:..|..|.|    ...|.|..:.
 Frog    68 GPAGNRGETGPAQAEKWIRN-------RRQREDEKRCQLGSPDEEETSLRCLEPEAGGGPQDEYR 125

  Fly   313 CYVRNSKLYCKMDYD-RLFGVKCSSCC-----HAILPQELVMRPIPNFVFHLPCFVCYACRLPLQ 371
            ..:.|......:..| |.||:..|..|     ...|....|..|:|....  .|:..::...|
 Frog   126 AVLINEGGNGLVASDPREFGINPSGGCASEGGQCQLSLLAVCGPLPEATG--GCYSAFSGDDP-- 186

  Fly   372 KGEQFMLRDGQL----------FCYRHDLEKEMFLAAAAAQHCGFV-----GLDEEDLLRPRDGR 421
            :|..:....||.          |.....|.:.....||:.:...|:     |.|.:....|.|..
 Frog   187 QGPGYFPPRGQFQPVNLKVEGNFPQSAPLPRRSARCAASCRLPTFIYDTGHGGDRQRGKCPADAP 251

  Fly   422 RGP-----KRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKK 481
            ..|     |:.||:.:..|.::.:..|.:...|..:.|..:|:..|::.:.:.|||||:|||.:|
 Frog   252 EEPGPPCRKKSRTLYSMDQLQELERLFAEDHYPDSEKRREIAEIIGVTPQRIMVWFQNRRAKWRK 316

  Fly   482 IQRKAKQNGGSGGGSGSGRGTGNSSA-TDDKDTNDKEDKCVKQELGGDSSGY---------LGGL 536
            :: |....|.....|.:|.....::. |..........:.|...:   :||:         :||:
 Frog   317 VE-KTSIKGPRKPLSAAGMSRPETAVLTVSSSVALSRPEAVSLSV---TSGFHTYGSAFPPVGGV 377

  Fly   537 DSTFASQPLNPNLPFSPDDYPANSNDSFCSSDLSLDGS 574
            .:.|:..| ...||.|.....::.:.:.|||..|..||
 Frog   378 RNGFSMVP-GSALPTSQSSDGSSQHSASCSSSSSGLGS 414

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	8/55 (15%)
		LIM	333..388	CDD:295319	12/69 (17%)
		Homeobox	427..480	CDD:278475	16/52 (31%)
nobox	XP_031761569.1	COG5576	<252..364	CDD:227863	26/115 (23%)
		Homeobox	262..316	CDD:395001	16/53 (30%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910