Sequence 1: | NP_729801.1 | Gene: | Lmx1a / 39406 | FlyBaseID: | FBgn0052105 | Length: | 640 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_002934210.1 | Gene: | lmx1a / 100492433 | XenbaseID: | XB-GENE-481569 | Length: | 380 | Species: | Xenopus tropicalis |
Alignment Length: | 390 | Identity: | 158/390 - (40%) |
---|---|---|---|
Similarity: | 207/390 - (53%) | Gaps: | 68/390 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 274 LCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSCC 338
Fly 339 HAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKE---MFLAAAA 400
Fly 401 AQHCGFVGLDEEDLLR------PRDGR--RGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREAL 457
Fly 458 AKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSGGGSGSGRGTGNSSATDDKDTNDKEDKCVK 522
Fly 523 QELGGDSSGYLGGLDSTFASQP------LNPNL----PF----SPDDYPANSNDSFCSSDLSLDG 573
Fly 574 SNFDQLDDDADSLSLNNLELQSTSSSGNQHSHSHSNPHDMLANLNNSLINPIDKLYLMQNSYFSS 638
Fly 639 638 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lmx1a | NP_729801.1 | LIM1_Lmx1b | 275..327 | CDD:188757 | 26/51 (51%) |
LIM | 333..388 | CDD:295319 | 28/54 (52%) | ||
Homeobox | 427..480 | CDD:278475 | 43/52 (83%) | ||
lmx1a | XP_002934210.1 | LIM1_Lmx1a | 35..86 | CDD:188756 | 25/50 (50%) |
LIM | 94..148 | CDD:351770 | 27/55 (49%) | ||
Homeobox | 195..249 | CDD:365835 | 44/53 (83%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 74 | 1.000 | Domainoid score | I8965 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D323174at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001820 | |
OrthoInspector | 1 | 1.000 | - | - | otm49088 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR24208 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R3844 |
SonicParanoid | 1 | 1.000 | - | - | X1182 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
10 | 10.050 |