DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lmx1a and lmx1a

DIOPT Version :9

Sequence 1:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster
Sequence 2:XP_002934210.1 Gene:lmx1a / 100492433 XenbaseID:XB-GENE-481569 Length:380 Species:Xenopus tropicalis


Alignment Length:390 Identity:158/390 - (40%)
Similarity:207/390 - (53%) Gaps:68/390 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   274 LCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSCC 338
            :||||.:.|.||||:.:.|:.|||||..||.|...|..:|:.|:.||||:.||::||.|||.:|.
 Frog    34 VCEGCERVICDRFLLRISDSLWHEQCAQCCTCKEPLESSCFYRDKKLYCRNDYEKLFAVKCGTCL 98

  Fly   339 HAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKE---MFLAAAA 400
            ..|.|.|.|||...| |:||.||.|..|...||||::|:|:||||.| :.|.|:|   :.|.:.|
 Frog    99 DTITPSEFVMRAQKN-VYHLGCFCCCVCDRQLQKGDEFVLKDGQLLC-KSDYERERDLLSLVSPA 161

  Fly   401 AQHCGFVGLDEEDLLR------PRDGR--RGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREAL 457
            |...| ...||:|..:      |.||:  :.|||||||||:|||:.|||||:.|.||||||||.|
 Frog   162 ASDSG-KSEDEDDAGKFDDSKGPEDGKDQKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETL 225

  Fly   458 AKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSGGGSGSGRGTGNSSATDDKDTNDKEDKCVK 522
            |.:|||||||||||||||||||||:.|:.:|.                   ..:.......:...
 Frog   226 AAETGLSVRVVQVWFQNQRAKMKKLARRQQQQ-------------------QQQQDQQNPSRIPS 271

  Fly   523 QELGGDSSGYLGGLDSTFASQP------LNPNL----PF----SPDDYPANSNDSFCSSDLSLDG 573
            .:....||..:.|:.:.|.:.|      |..|:    ||    :|...|.:....:....|    
 Frog   272 AQTHNSSSSSVEGIMNVFTTLPQQQLLSLEQNIYSADPFQQGLTPPQMPGDHMHPYGGESL---- 332

  Fly   574 SNFDQLDDDADSLSLNNLELQSTSSSGNQHSHSHSNPHDMLANLNNSLINPIDKLYLMQNSYFSS 638
              |.  |.|:|..|||||.             ....|...|.::...:.||||:||.||||||:|
 Frog   333 --FH--DIDSDDASLNNLS-------------ECLLPGPELGSIQGRVGNPIDRLYSMQNSYFTS 380

  Fly   639  638
             Frog   381  380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757 26/51 (51%)
LIM 333..388 CDD:295319 28/54 (52%)
Homeobox 427..480 CDD:278475 43/52 (83%)
lmx1aXP_002934210.1 LIM1_Lmx1a 35..86 CDD:188756 25/50 (50%)
LIM 94..148 CDD:351770 27/55 (49%)
Homeobox 195..249 CDD:365835 44/53 (83%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 74 1.000 Domainoid score I8965
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D323174at33208
OrthoFinder 1 1.000 - - FOG0001820
OrthoInspector 1 1.000 - - otm49088
Panther 1 1.100 - - LDO PTHR24208
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3844
SonicParanoid 1 1.000 - - X1182
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1010.050

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