Sequence 1: | NP_729801.1 | Gene: | Lmx1a / 39406 | FlyBaseID: | FBgn0052105 | Length: | 640 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_012820690.1 | Gene: | zfhx4 / 100486096 | XenbaseID: | XB-GENE-957673 | Length: | 3559 | Species: | Xenopus tropicalis |
Alignment Length: | 240 | Identity: | 60/240 - (25%) |
---|---|---|---|
Similarity: | 88/240 - (36%) | Gaps: | 41/240 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 410 DEEDLLRPRDGRRG-----PKRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQ 469
Fly 470 VWFQNQRAKMKKIQRKAKQNGGS--------------------------GGGSGSGRGTGNSSAT 508
Fly 509 DDKDTNDKEDKCVK------QELGGDSSGYLGGLDSTFASQ--PLNPNLPFSPDDYPANSNDSFC 565
Fly 566 SSDLSLDGSNFDQLDDDADSLSLNNLELQ--STSSSGNQHSHSHS 608 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lmx1a | NP_729801.1 | LIM1_Lmx1b | 275..327 | CDD:188757 | |
LIM | 333..388 | CDD:295319 | |||
Homeobox | 427..480 | CDD:278475 | 21/52 (40%) | ||
zfhx4 | XP_012820690.1 | C2H2 Zn finger | 641..661 | CDD:275368 | |
C2H2 Zn finger | 696..713 | CDD:275368 | |||
C2H2 Zn finger | 1372..1392 | CDD:275371 | |||
C2H2 Zn finger | 1400..1421 | CDD:275371 | |||
C2H2 Zn finger | 1516..1540 | CDD:275368 | |||
C2H2 Zn finger | 1568..1586 | CDD:275368 | |||
HOX | 2091..2146 | CDD:197696 | |||
Homeobox | 2190..2244 | CDD:365835 | |||
COG5576 | 2527..2647 | CDD:227863 | 31/112 (28%) | ||
Homeobox | 2557..2610 | CDD:365835 | 21/52 (40%) | ||
Homeobox | 2880..2933 | CDD:365835 | |||
C2H2 Zn finger | 3348..3390 | CDD:275371 | |||
C2H2 Zn finger | 3392..3414 | CDD:275371 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |