DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lmx1a and lmx1al

DIOPT Version :9

Sequence 1:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster
Sequence 2:XP_009298059.1 Gene:lmx1al / 100149437 ZFINID:ZDB-GENE-131213-1 Length:406 Species:Danio rerio


Alignment Length:397 Identity:165/397 - (41%)
Similarity:206/397 - (51%) Gaps:71/397 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   273 ELCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSC 337
            |:|.||...|.||||:.|.:.:|||.|:.|..|...|..|||.|:..||||.||::||..|||:|
Zfish    50 EVCAGCESPIADRFLLRVNELSWHETCVKCAVCRSALSGTCYCRDRLLYCKHDYEKLFVRKCSAC 114

  Fly   338 CHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEK--EMFLAAAA 400
            ..||...||:||.:.. |:||.||.|..|...||:|::|:|::|||.| |.|.||  ||..|.:.
Zfish   115 LQAIGRSELIMRVLGQ-VYHLGCFSCCECERRLQRGDEFVLKEGQLLC-RGDYEKEREMLAAISP 177

  Fly   401 AQHCGFVGLDEE-----------DLLRPRDGR--RGPKRPRTILTSQQRKQFKASFDQSPKPCRK 452
            |........|||           |     ||:  :..||||||||:|||:.|||||:.|.|||||
Zfish   178 APTESVKSEDEEGGGVSVGGKAGD-----DGKEHKRSKRPRTILTTQQRRAFKASFEVSSKPCRK 237

  Fly   453 VREALAKDTGLSVRVVQVWFQNQRAKMKKI-----QRKAKQNGGSGGGSGSGRGTGNSSATDDKD 512
            |||.||.:|||:||||||||||||||||||     |::.:|.....|||..|...|...:.|   
Zfish   238 VRETLAAETGLTVRVVQVWFQNQRAKMKKIARRQQQQQQQQEQEQMGGSRRGPSRGGRQSND--- 299

  Fly   513 TNDKEDKCVKQELGGDSSGYLGGLDSTFASQPLNPNLPFSPDDY-----------PANSNDSFCS 566
              |.||        |.|:..|.||.| ::|.|....|...|:.|           |....|...|
Zfish   300 --DSED--------GSSTHGLDGLLS-YSSLPRQQLLAIDPNIYGSEQFRHGLTPPQLGPDQMHS 353

  Fly   567 SDLSLDGSNFDQLDDDADSLSLNNLELQSTSSSGNQHSHSHSNPHDMLANLNNSLINPIDKLYLM 631
            .|   ..:.|..||.|.....|.:..|.:...|             :||   ..:.||||:||.|
Zfish   354 YD---SETVFHDLDSDGSLSHLGDCLLSTADGS-------------VLA---GRIGNPIDRLYSM 399

  Fly   632 QNSYFSS 638
            |||||:|
Zfish   400 QNSYFTS 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757 25/51 (49%)
LIM 333..388 CDD:295319 26/54 (48%)
Homeobox 427..480 CDD:278475 42/52 (81%)
lmx1alXP_009298059.1 LIM1_Lmx1b 52..104 CDD:188757 25/51 (49%)
LIM 111..165 CDD:295319 26/55 (47%)
Homeobox 212..265 CDD:278475 42/52 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 74 1.000 Domainoid score I9077
eggNOG 1 0.900 - - E33208_3BAC6
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H136689
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D323174at33208
OrthoFinder 1 1.000 - - FOG0001820
OrthoInspector 1 1.000 - - otm24731
orthoMCL 1 0.900 - - OOG6_105498
Panther 1 1.100 - - O PTHR24208
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1182
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.780

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