Protein Alignment CG4328 and lhx4

DIOPT Version :10

• Sequence 1: NP_648567.2
• Gene: CG4328 / 39405
• FlyBaseID: FBgn0036274
• Length: 544
• Species: Drosophila melanogaster
• Sequence 2: NP_001116445.1
• Gene: lhx4 / 571943
• ZFINID: ZDB-GENE-060728-1
• Length: 391
• Species: Danio rerio
• Alignment Length: 284
• Identity: 97/284 - (34%)
• Similarity: 153/284 - (53%)
• Gaps: 41/284 - (14%)

  Fly   166 SASNTPQAPLGMASNSGMGMELGLAMASPQLSQCAHCCQPICDRYIMRVVENSFHEGCLKCTACS 230
            ||:..|    |.::..|:...||:.:  .|:.|||.|.|.|.|::|::|::..:|..||||..|.
Zfish     6 SAAVLP----GESAVKGLPDILGVPL--QQIPQCAGCSQHILDKFILKVLDRHWHSKCLKCADCH 64

  Fly   231 LHLVHSCYAREGKLYCRVDYERLYIRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLK 295
            ..|...|::|.|.:||:.|:.:.: ...|..|...|...::|.:..:.|:||.|||||:|...|.
Zfish    65 ALLADKCFSRAGNVYCKEDFFKRF-GTKCASCQQGIPPTQVVRKAQDFVYHLHCFACVMCSRQLA 128

  Fly   296 KGEQ-YVVKQGQLFCRFDYEKEVEMLQGYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKAS 359
            .|:: |:::.|:|.|:.|||...:        .|       |...|.|||||.:..:|....|::
Zfish   129 TGDEFYLMEDGRLVCKEDYETAKQ--------ND-------DSETGAKRPRTTITAKQLETLKSA 178

  Fly   360 FEVSPKPCRKVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKA---------KQEPPSKGASDS 415
            ::.||||.|.|||.|:.:|||.:|:|||||||:|||.|:::|.|         |....::|:|.:
Zfish   179 YKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRNRGSSKT 243

  Fly   416 QDSQESLDSSLATKIKDEAHSDSE 439
            :....:.|:.|         ||||
Zfish   244 EKESSADDAGL---------SDSE 258

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4328	NP_648567.2	LIM1_Lmx1b	199..251	CDD:188757	21/51 (41%)
		LIM	259..313	CDD:413332	19/54 (35%)
		COG5576	<332..439	CDD:227863	42/115 (37%)
		HOX	341..393	CDD:197696	27/51 (53%)
lhx4	NP_001116445.1	LIM1_Lhx4	33..84	CDD:188852	20/50 (40%)
		LIM2_Lhx3_Lhx4	92..147	CDD:188762	19/54 (35%)
		Homeodomain	161..217	CDD:459649	30/55 (55%)