DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4328 and lhx8

DIOPT Version :10

Sequence 1:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster
Sequence 2:XP_012816489.1 Gene:lhx8 / 548653 XenbaseID:XB-GENE-494997 Length:385 Species:Xenopus tropicalis


Alignment Length:382 Identity:107/382 - (28%)
Similarity:159/382 - (41%) Gaps:63/382 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   114 QPMGMGPGTGTGMGTGTGHGP------------GPPNHTHCNRITLGECSLNGMDGFATPAAP-- 164
            ||.|:|.|..|         |            .|.....|....|........:|.....:|  
 Frog    14 QPPGLGQGVPT---------PRSVRSFLSVLQFAPLMSEECGGAALPMGRSRKSEGTPVQGSPGA 69

  Fly   165 ----PSASNTPQAPLGMASNSGM---GMELGLAMASPQLSQCAHCCQPICDRYIMRVVENSFHEG 222
                .|.|:.|.:|:..:|...|   |:..|       .|.|::|...|.|:|:::|.:..:|..
 Frog    70 AMDEDSCSSVPLSPVSSSSPHSMPAAGLNQG-------KSVCSNCGLEIVDKYLLKVNDLCWHVR 127

  Fly   223 CLKCTAC--SLHLVHSCYAREGKLYCRVDYERLYIRNHCLGCGLKIAADELVMRCHENVFHLKCF 285
            ||.|:.|  ||....|||.::..:||::||.|.| ...|..||..|.|.:.|.|...||:||.||
 Frog   128 CLSCSVCRTSLGRHTSCYIKDKDIYCKLDYFRRY-GTRCSRCGRHIHATDWVRRAKGNVYHLACF 191

  Fly   286 ACVVCGALLKKGEQYVVKQGQLFCRFDYE-------KEVEMLQGYDFYGDELFPPKLDGRRGPKR 343
            ||..|...|..||::.:.:.::.||..|:       :.||........|..|....::..:..||
 Frog   192 ACYSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKRAVENGNRVSVEGALLTEQDINQPKPAKR 256

  Fly   344 PRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQVWFQNQRAKVKK-IQKKAKQEP 407
            .||.....|.:..:|.|.....|..:..:.|::.||||.|::||||||.||:.|| :........
 Frog   257 ARTSFTADQLQVMQAQFAQDNNPDAQTLQKLSERTGLSRRVIQVWFQNCRARHKKHVSPNHSSTT 321

  Fly   408 PSKGASDSQDSQESL-----------DSSLATKIKD--EAHSDSESQLES--PYSTT 449
            |......|:.|...|           |..:.|.:..  :|||.:...|:|  |:|.|
 Frog   322 PVTTVQPSRLSPPMLEEMTYSAYVPQDGPMLTALHSYMDAHSPTALGLQSLLPHSMT 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757 19/53 (36%)
LIM 259..313 CDD:413332 21/53 (40%)
COG5576 <332..439 CDD:227863 33/120 (28%)
HOX 341..393 CDD:197696 20/51 (39%)
lhx8XP_012816489.1 LIM1_Lhx7_Lhx8 103..158 CDD:188767 19/54 (35%)
LIM2_Lhx7_Lhx8 165..219 CDD:188769 21/53 (40%)
Homeodomain 255..311 CDD:459649 22/55 (40%)

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