DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4328 and Lmo3

DIOPT Version :10

Sequence 1:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster
Sequence 2:XP_006237647.1 Gene:Lmo3 / 497798 RGDID:1561357 Length:156 Species:Rattus norvegicus


Alignment Length:144 Identity:52/144 - (36%)
Similarity:79/144 - (54%) Gaps:9/144 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   188 GLAMASPQLSQ----CAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVH---SCYAREGKLY 245
            |:.|.|.|...    ||.|.:.|.|||:::.::..:||.||||..|...|..   :.|.:...:.
  Rat     9 GIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLIL 73

  Fly   246 CRVDYERLY-IRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFC 309
            ||.||.||: :..:|..|...|.|.|:|||..:||:||.||||.:|......|:::.:|...:.|
  Rat    74 CRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILC 138

  Fly   310 RFDYEKEVEMLQGY 323
            :.|||:.: |.:||
  Rat   139 QTDYEEGL-MKEGY 151

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757 19/54 (35%)
LIM 259..313 CDD:413332 20/53 (38%)
COG5576 <332..439 CDD:227863
HOX 341..393 CDD:197696
Lmo3XP_006237647.1 LIM1_LMO1_LMO3 24..78 CDD:188774 18/53 (34%)
LIM2_LMO1_LMO3 88..142 CDD:188775 20/53 (38%)
Blue background indicates that the domain is not in the aligned region.

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