DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4328 and Abd-B

DIOPT Version :9

Sequence 1:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_001303472.1 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster


Alignment Length:480 Identity:102/480 - (21%)
Similarity:159/480 - (33%) Gaps:157/480 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 IDEHH---PMQIGMFPMDIKCQQQQLGAGQLPQTGGLNQLLLLNG----NERMLTTP-----TTA 54
            :.:.|   |.|........:.|||||..  .|..|.|:......|    .::.||:|     ...
  Fly   108 VQQQHLPAPQQQQQLQQQQQQQQQQLAT--TPVAGALSPAQTPTGPSAQQQQHLTSPHHQQLPQQ 170

  Fly    55 ATSVVVAAGRSASTK-------AGVAHNDKMASVSRTVNGSCSNHNSSNSSSSSSTNSSSNMAIN 112
            .|...||:|.|::.:       |.||..........|.        |.:.||.||.....||:|.
  Fly   171 QTPNSVASGASSNLQQQQQQQNAAVAPGQTQIVAPTTA--------SVSPSSVSSQKEDINMSIQ 227

  Fly   113 KQPMGM-----GPG----TGTGMGTGTGH------------GPGPPNHTHCNRITLGECSLNGMD 156
            ..|:.:     |||    |...:...|.|            |.|..:..|.              
  Fly   228 LAPLHIPAIRAGPGFETDTSAAVKRHTAHWAYNDEGFNQHYGSGYYDRKHM-------------- 278

  Fly   157 GFATPAAPPSASNTPQAPLGM--ASNSGMGMELGLAMASPQLSQCAHCCQPICDRYIMRVVENSF 219
             ||.|.  |..    |.|:|.  ..|.........|.|:..:::        .:|::......|.
  Fly   279 -FAYPY--PET----QFPVGQYWGPNYRPDQTTSAAAAAAYMNE--------AERHVSAAARQSV 328

  Fly   220 HEGCLKCTACSLHLVHSCYAREGKL--YCRVDYERLYIRNHCLGCGLKIAADELVMRCHENVFHL 282
             ||    |:.|.: ....|:..|.|  |...:|.     :.....||.:.|   |..|..|.   
  Fly   329 -EG----TSTSSY-EPPTYSSPGGLRGYPSENYS-----SSGASGGLSVGA---VGPCTPNP--- 376

  Fly   283 KCFACVVCGALLKKGEQYVVKQGQLFCRFD-YEKEVEMLQGYDFYGDELFPPKLDGRRGPKRPRT 346
                    |.....|:..|.|:.:.:.:|. .|.|.|.|  ::.|                    
  Fly   377 --------GLHEWTGQVSVRKKRKPYSKFQTLELEKEFL--FNAY-------------------- 411

  Fly   347 ILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQVWFQNQRAKVKK-IQKKAKQEPPSK 410
                           ||    ::.|..||::..|:.|.|::||||:|.|.|| .|::|.|:    
  Fly   412 ---------------VS----KQKRWELARNLQLTERQVKIWFQNRRMKNKKNSQRQANQQ---- 453

  Fly   411 GASDSQDSQESLDSSLATKIKDEAH 435
              :::.:|..:.:.:.||:.....|
  Fly   454 --NNNNNSSSNHNHAQATQQHHSGH 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757 10/53 (19%)
LIM 259..313 CDD:295319 11/54 (20%)
COG5576 <332..439 CDD:227863 23/105 (22%)
HOX 341..393 CDD:197696 12/51 (24%)
Abd-BNP_001303472.1 Homeobox 390..443 CDD:278475 20/93 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 45 1.000 Domainoid score I3555
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3844
SonicParanoid 00.000 Not matched by this tool.
32.940

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