Protein Alignment CG4328 and lhx6a

DIOPT Version :10

• Sequence 1: NP_648567.2
• Gene: CG4328 / 39405
• FlyBaseID: FBgn0036274
• Length: 544
• Species: Drosophila melanogaster
• Sequence 2: NP_001004015.1
• Gene: lhx6a / 445565
• ZFINID: ZDB-GENE-041025-1
• Length: 375
• Species: Danio rerio
• Alignment Length: 298
• Identity: 94/298 - (31%)
• Similarity: 138/298 - (46%)
• Gaps: 33/298 - (11%)

  Fly   148 GECSLNGMDGFATPAAPPSASNTPQ--APLGMASNSGMGMELGLAMASPQLSQCAHCCQPICDRY 210
            ||...:.|:...|.:: ||..:||.  :|...||          ::.|...:.||.|...|.|||
Zfish    55 GESHRSNMEKDDTRSS-PSPPSTPSICSPTSTAS----------SVPSTGKNVCASCGLEILDRY 108

  Fly   211 IMRVVENSFHEGCLKCTAC--SLHLVHSCYAREGKLYCRVDYERLYIRNHCLGCGLKIAADELVM 273
            :::|....:|..||:|:.|  ||....|||.:..:::|::||...: ...|..||.:|.|.:.|.
Zfish   109 LLKVNNLIWHVRCLECSVCRTSLRQHSSCYIKNKEIFCKMDYFSRF-GTKCARCGRQIYASDWVR 172

  Fly   274 RCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDYEKEVEMLQGYDFYGDEL-----FPP 333
            |...|.:||.||||..|...|..||::.:.:.::.||..|:..||.|:.....|..|     .|.
Zfish   173 RARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMVENLKRAAESGSGLTLEGAVPS 237

  Fly   334 KLDGRRGP-KRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQVWFQNQRAKVK 397
            :.|.:..| ||.||....:|.:..:|.|.....|..:..:.||..||||.|::||||||.||:.|
Zfish   238 EQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 302

  Fly   398 KIQKKAKQEPPSKGASDSQDSQESLDSSLATKIKDEAH 435
            |       ..|..........|..:..||    .||.|
Zfish   303 K-------HTPQHNGPPQAHPQARMPPSL----PDELH 329

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4328	NP_648567.2	LIM1_Lmx1b	199..251	CDD:188757	20/53 (38%)
		LIM	259..313	CDD:413332	20/53 (38%)
		COG5576	<332..439	CDD:227863	35/105 (33%)
		HOX	341..393	CDD:197696	22/52 (42%)
lhx6a	NP_001004015.1	LIM1_Lhx6	97..150	CDD:188766	19/52 (37%)
		LIM2_Lhx6	158..212	CDD:188768	20/53 (38%)
		Homeodomain	247..303	CDD:459649	23/55 (42%)