DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4328 and Scr

DIOPT Version :10

Sequence 1:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster


Alignment Length:192 Identity:44/192 - (22%)
Similarity:60/192 - (31%) Gaps:74/192 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 QQQQLGAGQLPQT-------------------------GGL-------NQLLLLNGNERMLTTPT 52
            |||||...|.||.                         ||:       |.....|.|.:.|.:|.
  Fly   144 QQQQLAQQQHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNSANSNNNNSQSLASPQ 208

  Fly    53 TAAT----------SVVVAAGRS------------ASTKAGVAHNDKMASVSRTVNGSCSNHN-- 93
            ..:|          |||.:..||            |:..||:.:|...:.||    |...|.|  
  Fly   209 DLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVS----GGPGNVNVP 269

  Fly    94 --SSNSSSSSSTNSSSNMAINKQPMGMGPGTGTGMGTGTGHGPGPPNHTHCNRITLGECSLN 153
              |.....|.|.:.|.|.|            |:...:|.|....|..:....|:.||..::|
  Fly   270 MHSPGGGDSDSESDSGNEA------------GSSQNSGNGKKNPPQIYPWMKRVHLGTSTVN 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757
LIM 259..313 CDD:413332
COG5576 <332..439 CDD:227863
HOX 341..393 CDD:197696
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.