DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4328 and pb

DIOPT Version :10

Sequence 1:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster


Alignment Length:210 Identity:55/210 - (26%)
Similarity:78/210 - (37%) Gaps:35/210 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   341 PKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQ 405
            |:|.||.....|....:..|..:...||..|..:|....|:.|.|:|||||:|.|.|: |..:| 
  Fly   198 PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKR-QTLSK- 260

  Fly   406 EPPSKGASDSQDSQESLDSSLATKIKDEAHSDSESQ-------LESPYSTTSDGLTRMRCTIKDE 463
                   :|.:|:::||..       |:..|||.|.       .|.|    ||.:.......:..
  Fly   261 -------TDDEDNKDSLKG-------DDDQSDSNSNSKKSCQGCELP----SDDIPDSTSNSRGH 307

  Fly   464 QEQVPFNCMETNKENCNKNSEPILNTILGLSYATFQQLMGPFAQTPMINPIDRLYSMQSSYFRPE 528
            ....|   ..||......|..|..:...|:|    ..|||. ......|.|....|:.||....|
  Fly   308 NNNTP---SATNNNPSAGNLTPNSSLETGIS----SNLMGS-TTVSASNVISADSSVASSVSLDE 364

  Fly   529 ELQSYGECGVKDSMD 543
            :::......||...|
  Fly   365 DIEESSPIKVKKKDD 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757
LIM 259..313 CDD:413332
COG5576 <332..439 CDD:227863 30/97 (31%)
HOX 341..393 CDD:197696 18/51 (35%)
pbNP_476669.3 Homeodomain 199..255 CDD:459649 19/55 (35%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.