Protein Alignment CG4328 and exex

DIOPT Version :10

• Sequence 1: NP_648567.2
• Gene: CG4328 / 39405
• FlyBaseID: FBgn0036274
• Length: 544
• Species: Drosophila melanogaster
• Sequence 2: NP_648164.1
• Gene: exex / 38884
• FlyBaseID: FBgn0041156
• Length: 525
• Species: Drosophila melanogaster
• Alignment Length: 545
• Identity: 114/545 - (20%)
• Similarity: 165/545 - (30%)
• Gaps: 227/545 - (41%)

  Fly    34 GLNQLLLLNGNERMLTTPTTAATSVVVAAGRSASTKAGVAHNDKMASVSRTVNGSCSNHNSSNSS 98
            |.||..|   :.|...||:..|.|...:|   |:|.:.|:          |...:.|...:.:||
  Fly    58 GSNQSTL---SPRSQITPSPPAASPTHSA---ATTGSPVS----------TYTPALSPGGAQDSS 106

  Fly    99 SSSSTNSSSNMAINKQPMGMGPGTGTGMGTGTGHGPGPPNHTHCNRITLGECSLNGMDGFATP-- 161
            .:.| ..||.|.:...||        .:|||..|...||.|....           ::||..|
  Fly   107 QTES-GQSSQMPLLVAPM--------PVGTGPPHSHPPPPHPRLY-----------VEGFPPPHH 151

  Fly   162 -------------------------------AAPPSASNTPQAPLGMASNSGMGME----LGLAM 191
                                           ||||..|  ||......|:||..|.    |..|.
  Fly   152 VPHPHPALGTYPLPRLPLMLPANPPGVPSGAAAPPPVS--PQPAANHLSHSGATMATTTLLPPAQ 214

  Fly   192 ASPQLSQCAHCC-----------QPICDRYIMRVVENSFHEGCLKCTACSLHLVHSCYAR----- 240
            :.|:.|.|....           |||       :|::..         .:||     |||
  Fly   215 SQPKKSFCIDALLAKSQHQSGEPQPI-------IVDDRL---------AALH-----YARDQAEL 258

  Fly   241 -------------------------EGKLYCRVDYERLY--------------IRNH------CL 260
                                     |.:...|:...|.|              ..:|      ..
  Fly   259 NHAFVTASNAAAAAQAAASAAGGISEQEALQRIRDSREYDSPSPDGMSRSESPTSSHRSSPPISP 323

  Fly   261 GCGLK------IAADELVMRCHENVFHLKCFACVVCGALLKK------------------GEQY- 300
            ||..:      :....|.||..:  ||.:          .||                  |..|
  Fly   324 GCEDQQQPHGALHPQHLSMRMSD--FHDE----------FKKPIPPHSPIRPQDFPLYAGGHPYQ 376

  Fly   301 -VVKQGQLFCR-FDYE-KEVEMLQGYDFYGDELFPPKLD----GRRG------------------ 340
             :.:.|..|.| .|.. |.:.:..|::|     .|.:|.    .|.|
  Fly   377 LLAQGGSAFHRPLDPSGKPIPIPMGHNF-----MPSQLQFEFLARAGMLHHRIPELAAYPHHAIL 436

  Fly   341 --PKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKA 403
              .:||||...:||....:..|:.:....|..|..:|....||...|::||||:|.|.|: .|||
  Fly   437 GKTRRPRTAFTSQQLLELEKQFKQNKYLSRPKRFEVASGLMLSETQVKIWFQNRRMKWKR-SKKA 500

  Fly   404 KQEPPSKGASDSQDSQESLDSSLAT 428
            :||...:..::.|..|:....|.|:
  Fly   501 QQEAKERAKANQQQQQQQQTPSAAS 525

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4328	NP_648567.2	LIM1_Lmx1b	199..251	CDD:188757	12/92 (13%)
		LIM	259..313	CDD:413332	14/80 (18%)
		COG5576	<332..439	CDD:227863	33/121 (27%)
		HOX	341..393	CDD:197696	17/51 (33%)
exex	NP_648164.1	Homeodomain	440..496	CDD:459649	19/55 (35%)