Protein Alignment CG4328 and vvl

DIOPT Version :9

• Sequence 1: NP_648567.2
• Gene: CG4328 / 39405
• FlyBaseID: FBgn0036274
• Length: 544
• Species: Drosophila melanogaster
• Sequence 2: NP_001303384.1
• Gene: vvl / 38752
• FlyBaseID: FBgn0086680
• Length: 742
• Species: Drosophila melanogaster
• Alignment Length: 601
• Identity: 118/601 - (19%)
• Similarity: 193/601 - (32%)
• Gaps: 227/601 - (37%)

  Fly    30 PQTGGLNQLLLLNGNERMLTTPTTAATSVVVAAGRSASTKAGVAHNDKMASVSRTVNGSCSNHNS 94
            |.:|.|:  :.|.|.....::|.:||.     ||.....:....|:...|:.:         |:.
  Fly     9 PPSGDLD--MALGGGGYHTSSPRSAAD-----AGEMKYMQHHHHHHAAAAAAA---------HHQ 57

  Fly    95 SNSSSSSSTNSSSNMAINKQPMGMGPGTGTGMGTGTGHG------PGP---PNHTHCNRITLGEC 150
            ..||.|              |.|.|.|.|.|:|:|:|.|      |.|   .:|||
  Fly    58 LPSSPS--------------PNGQGNGGGLGLGSGSGLGSWSALHPDPWMQTHHTH--------- 99

  Fly   151 SLNGMDGFATPAAPPSASNTPQAPLGMASNSGMGMELGLAMASPQLSQCAHCCQPICDRYIMRVV 215
                  .....||..||::|.:..:   |:......:...||||..:..|.
  Fly   100 ------HLPAAAAVASAADTVKQEM---SHLSQQTRIQQGMASPHAAWHAP-------------- 141

  Fly   216 ENSFHEGCLKCTACSLHLVHSCYAREGKLY--------------------CRVDYERLYIRNHCL 260
                |.|....|..|....|  :|..|.|:                    .|.:..:|:|.:| :
  Fly   142 ----HAGHYAPTGGSPLQYH--HAMNGMLHHPAHAVAAAHHQSVAPLHHTLRGESPQLHIHHH-M 199

  Fly   261 GCGLKIA----------ADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVK------------ 303
            |.|.:.|          :|:           |:.||        |:.:|..:|
  Fly   200 GGGDRDAISGGEEDTPTSDD-----------LEAFA--------KQFKQRRIKLGFTQADVGLAL 245

  Fly   304 ---QGQLF-----CRFD------------------YEKEVEMLQGYDFYGDELFPPKLD-----G 337
               .|.:|     |||:                  :.:|.:...|        .|..:|     |
  Fly   246 GTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTG--------SPTSIDKIAAQG 302

  Fly   338 RRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKK 402
            |:  ::.||.:....:.|.:..|...|||..:...:||....|...:|:|||.|:|      ||:
  Fly   303 RK--RKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRR------QKE 359

  Fly   403 AKQEPPSKGASDSQD-----------------------------------SQESLDSSLATKIKD 432
            .:..||:....|..|                                   |.:::.||.....:.
  Fly   360 KRMTPPNTLGGDMMDGMPPGHMHHGGYHPHHDMHGSPMGTHSHSHSPPMLSPQNMQSSAVAAHQL 424

  Fly   433 EAHSDSESQLESPYSTTSDGLTRMRCTIKDEQEQVPFNCMETNKENCNKNSEPILNT---ILGLS 494
            .||..||.| ||..:..:.....:....:.:|:|......:..::..::..:...||   ..|.|
  Fly   425 AAHXQSEIQ-ESNSAAAASTPASLNSLSQQQQQQQQQQQQQHQQQQQHQQQQHTPNTPSSSAGSS 488

  Fly   495 YATFQQLMGPFAQTPM 510
            .....|:|.|  |:|:
  Fly   489 ATMTSQVMSP--QSPL 502

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4328	NP_648567.2	LIM1_Lmx1b	199..251	CDD:188757	10/71 (14%)
		LIM	259..313	CDD:295319	15/101 (15%)
		COG5576	<332..439	CDD:227863	31/146 (21%)
		HOX	341..393	CDD:197696	15/51 (29%)
vvl	NP_001303384.1	POU	212..286	CDD:197673	13/92 (14%)
		Homeobox	307..360	CDD:278475	18/58 (31%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R3844
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.940