DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4328 and otp

DIOPT Version :10

Sequence 1:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_001286654.1 Gene:otp / 37364 FlyBaseID:FBgn0015524 Length:416 Species:Drosophila melanogaster


Alignment Length:60 Identity:25/60 - (41%)
Similarity:32/60 - (53%) Gaps:0/60 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   342 KRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQK 401
            ||.||.....|....:..|..:..|...:||.:|...||:...|||||||:|||.||.:|
  Fly   117 KRHRTRFTPAQLNELERCFSKTHYPDIFMREEIAMRIGLTESRVQVWFQNRRAKWKKRKK 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757
LIM 259..313 CDD:413332
COG5576 <332..439 CDD:227863 25/60 (42%)
HOX 341..393 CDD:197696 19/50 (38%)
otpNP_001286654.1 Homeodomain 117..168 CDD:459649 19/50 (38%)
Blue background indicates that the domain is not in the aligned region.

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