DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4328 and Lmo2

DIOPT Version :10

Sequence 1:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_001032435.2 Gene:Lmo2 / 362176 RGDID:1307101 Length:220 Species:Rattus norvegicus


Alignment Length:169 Identity:54/169 - (31%)
Similarity:78/169 - (46%) Gaps:16/169 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 ATPAAPPSASNTPQAPLGMA--------SNSGMGMELGLAMASPQLSQCAHCCQPICDRYIMRVV 215
            ||..|||.....|.:|:..|        |...:...|.:   .|.|..|..|.|.|.|||.::.:
  Rat    47 ATKGAPPPPGTPPPSPMSSAIERKSLDPSEEPVDEVLQI---PPSLLTCGGCQQNIGDRYFLKAI 108

  Fly   216 ENSFHEGCLKCTACSLHL---VHSCYAREGKLYCRVDYERLYIRNH-CLGCGLKIAADELVMRCH 276
            :..:||.||.|..|...|   ....|.:.|:..||.||.||:.::. |..|..:|.|.|:.||..
  Rat   109 DQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVK 173

  Fly   277 ENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFD-YE 314
            :.|:||:||.|..|......|::|::....:.|..| ||
  Rat   174 DKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757 19/54 (35%)
LIM 259..313 CDD:413332 18/54 (33%)
COG5576 <332..439 CDD:227863
HOX 341..393 CDD:197696
Lmo2NP_001032435.2 LIM1_LMO2 92..147 CDD:188770 19/54 (35%)
LIM2_LMO2 156..211 CDD:188771 18/54 (33%)
Blue background indicates that the domain is not in the aligned region.

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