DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4328 and al

DIOPT Version :10

Sequence 1:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster


Alignment Length:85 Identity:30/85 - (35%)
Similarity:41/85 - (48%) Gaps:5/85 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   324 DFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQVW 388
            |...||..|     :|..:|.||...:.|....:.:|..:..|....||.||...||:...:|||
  Fly    73 DCEADEYAP-----KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVW 132

  Fly   389 FQNQRAKVKKIQKKAKQEPP 408
            |||:|||.:|.:|...|..|
  Fly   133 FQNRRAKWRKQEKVGPQSHP 152

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757
LIM 259..313 CDD:413332
COG5576 <332..439 CDD:227863 27/77 (35%)
HOX 341..393 CDD:197696 18/51 (35%)
alNP_722629.1 Homeodomain 86..142 CDD:459649 21/55 (38%)
OAR 374..391 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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