DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4328 and CG11085

DIOPT Version :10

Sequence 1:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_572815.3 Gene:CG11085 / 32213 FlyBaseID:FBgn0030408 Length:295 Species:Drosophila melanogaster


Alignment Length:168 Identity:41/168 - (24%)
Similarity:51/168 - (30%) Gaps:64/168 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 GLNQLLLLNGNERMLTTPTTAATSVVVAAGRSASTKAGVAHNDKMASVSRTVNGSCSNHNSSNSS 98
            |..|.|||:.:.|..|                        |:|:                ||..|
  Fly    49 GCQQELLLSHHHRRFT------------------------HHDE----------------SSVES 73

  Fly    99 SSSSTNSSSNMAINKQPMGMGPGTGTGMGTGTGHGPGPPNHTHCNRITLGECSLNGMDGFAT--- 160
            ..|:|.              |||:|||.|.|.|.|.|       ..:..|..:.....|.|.   
  Fly    74 CLSATR--------------GPGSGTGSGGGGGGGGG-------GGVASGLSAAAAAAGVAAGLL 117

  Fly   161 PAAPPSASNTPQAPLGMASNSGMGMELGLAMASPQLSQ 198
            .||...|:....|..|....||.|...|.|....|||:
  Fly   118 AAAASGANGDRDANGGSGPGSGGGTSGGYAEHKLQLSK 155

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757 41/168 (24%)
LIM 259..313 CDD:413332
COG5576 <332..439 CDD:227863
HOX 341..393 CDD:197696
CG11085NP_572815.3 Homeodomain 161..217 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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