Protein Alignment CG4328 and Lim1

DIOPT Version :10

• Sequence 1: NP_648567.2
• Gene: CG4328 / 39405
• FlyBaseID: FBgn0036274
• Length: 544
• Species: Drosophila melanogaster
• Sequence 2: NP_572505.1
• Gene: Lim1 / 31813
• FlyBaseID: FBgn0026411
• Length: 505
• Species: Drosophila melanogaster
• Alignment Length: 295
• Identity: 92/295 - (31%)
• Similarity: 130/295 - (44%)
• Gaps: 81/295 - (27%)

  Fly   199 CAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVHSCYAREGKLYCRVDYERLYIRNHCLGCG 263
            ||.|.:||.|::::.|:|.::|..|::|..|...|...|::||.|||||.|:.|.| ...|.|||
  Fly    27 CAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFFRRY-GTKCSGCG 90

  Fly   264 LKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQ-YVVKQGQLFCRFDYEKEVEMLQGYDFYG 327
            ..||..:||.:..:.||||.||.|.:|...|..||| ||:...:..|:.||........|::...
  Fly    91 QGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDYLLGKAPSCGHNSLS 155

  Fly   328 DELF-----------PPKL---------------------------------------------- 335
            |.|.           ||.|
  Fly   156 DSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDSKNTHDDSDQG 220

  Fly   336 ------DGR-------------RGPKR--PRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTG 379
                  |||             .|.||  |||.:..:|....|.:|..:|||.|.:||.|||:||
  Fly   221 SLDGDPDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETG 285

  Fly   380 LSLRIVQVWFQNQRAKVKKI-QKKAKQEPPSKGAS 413
            |.:|::||||||:|:|.::: |..:...||..|.:
  Fly   286 LPMRVIQVWFQNKRSKERRMKQITSMGRPPFFGGA 320

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4328	NP_648567.2	LIM1_Lmx1b	199..251	CDD:188757	22/51 (43%)
		LIM	259..313	CDD:413332	23/54 (43%)
		COG5576	<332..439	CDD:227863	40/150 (27%)
		HOX	341..393	CDD:197696	27/53 (51%)
Lim1	NP_572505.1	LIM1_Lhx1_Lhx5	27..78	CDD:188753	21/50 (42%)
		LIM2_Lhx1_Lhx5	86..141	CDD:188761	23/54 (43%)
		COG5576	185..324	CDD:227863	37/136 (27%)
		Homeodomain	248..304	CDD:459649	27/55 (49%)