Protein Alignment CG4328 and lhx3

DIOPT Version :10

• Sequence 1: NP_648567.2
• Gene: CG4328 / 39405
• FlyBaseID: FBgn0036274
• Length: 544
• Species: Drosophila melanogaster
• Sequence 2: XP_073805886.1
• Gene: lhx3 / 30455
• ZFINID: ZDB-GENE-980526-131
• Length: 411
• Species: Danio rerio
• Alignment Length: 384
• Identity: 115/384 - (29%)
• Similarity: 180/384 - (46%)
• Gaps: 79/384 - (20%)

  Fly   192 ASPQLSQCAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVHSCYAREGKLYCRVDYERLYIR 256
            :|..:..||.|.|.|.||:|::|::..:|..||||:.|...|...|::|...:||:.|:.:..:.
Zfish    21 SSQDIPVCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLADKCFSRGDSVYCKDDFFKSPLT 85

  Fly   257 NHCLGC------GLKIAA-------DELVMRCHENVFHLKCFACVVCGALLKKG-EQYVVKQGQL 307
            ..|| |      |.|.||       .::|.|..:.|:||.||||:||...|..| |.|:::..:|
Zfish    86 RVCL-CFVSRRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRL 149

  Fly   308 FCRFDYEKEVEMLQGYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRE 372
            .|:.|||...:.                :.....|||||.:..:|....|.::..||||.|.|||
Zfish   150 VCKADYETAKQR----------------EADSTAKRPRTTITAKQLETLKNAYNNSPKPARHVRE 198

  Fly   373 NLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQE---------PPSKGASDS-QDS--QESLDSS 425
            .|:.:|||.:|:|||||||:|||.|:::|.|.::         ..|:|:|.| :||  ::.:||.
Zfish   199 QLSTETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGSSKSDKDSTQEDGMDSD 263

  Fly   426 LATKIKDE------AHSDSESQLESPYSTTSDGLTRMRCTIKDEQEQVPFNCMETNKENCNKNSE 484
            ......||      .||:.   :.|..|.:|..|:|                     :..|..:.
Zfish   264 AEVSFTDEPPMSDLGHSNG---IYSSLSESSPALSR---------------------QGGNHPAF 304

  Fly   485 PILNTILGLSYATFQ--QLMGPFA--QTP-MINPIDRLYSMQSSYFRPEE-LQSYGECG 537
            |:.:..:..|...:.  |...|::  |:| .:.|:.|...:.||...||. |...|:.|
Zfish   305 PLEHGAIIPSQEPYHDIQASSPYSLPQSPGPLQPLPRHQPLISSLVYPESGLPMVGQSG 363

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4328	NP_648567.2	LIM1_Lmx1b	199..251	CDD:188757	21/51 (41%)
		LIM	259..313	CDD:413332	24/67 (36%)
		COG5576	<332..439	CDD:227863	45/124 (36%)
		HOX	341..393	CDD:197696	27/51 (53%)
lhx3	XP_073805886.1	None