DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4328 and lmo2

DIOPT Version :10

Sequence 1:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_571186.1 Gene:lmo2 / 30332 ZFINID:ZDB-GENE-980526-419 Length:159 Species:Danio rerio


Alignment Length:123 Identity:42/123 - (34%)
Similarity:62/123 - (50%) Gaps:4/123 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 PQLSQCAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHL---VHSCYAREGKLYCRVDYERLYI 255
            |.|..|..|.|.|.||:.::.:|..:||.||.|..|...|   ....|.:.|:..||.||.||:.
Zfish    25 PSLLTCGGCQQSIGDRFFLKAIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89

  Fly   256 RNH-CLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFD 312
            ::. |..|..:|.|.|:.||..:.|:||:||.|..|......|::|::....:.|..|
Zfish    90 QDGLCASCEKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757 19/54 (35%)
LIM 259..313 CDD:413332 18/54 (33%)
COG5576 <332..439 CDD:227863
HOX 341..393 CDD:197696
lmo2NP_571186.1 LIM1_LMO2 30..85 CDD:188770 19/54 (35%)
LIM2_LMO2 94..149 CDD:188771 18/54 (33%)
Blue background indicates that the domain is not in the aligned region.

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