DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4328 and isl2a

DIOPT Version :10

Sequence 1:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster
Sequence 2:XP_005163214.1 Gene:isl2a / 30157 ZFINID:ZDB-GENE-980526-562 Length:360 Species:Danio rerio


Alignment Length:354 Identity:99/354 - (27%)
Similarity:154/354 - (43%) Gaps:92/354 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   188 GLAMASPQLSQCAHCCQPICDRYIMRVVEN-SFHEGCLKCTACSLHL--VHSCYAREGKLYCRVD 249
            |:||       |..|...|.|:||:||..: .:|..||||..||.:|  ..:|:.|:||.||:.|
Zfish    23 GIAM-------CVGCGSQIHDQYILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRD 80

  Fly   250 YERLY-IRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFDY 313
            |.||: |:  |..|.:...:.:||||..:||:|::||.|.||...|..|:::.::..:|.||.|:
Zfish    81 YVRLFGIK--CAKCNIGFCSSDLVMRARDNVYHMECFRCSVCSRHLLPGDEFSLRDEELLCRADH 143

  Fly   314 EKEVEMLQGYDFYGDELFPPKLDGRRG---PKRP----------------------RTILNTQQR 353
            ...:|....    |..:.|..:...|.   |.:|                      ||:||.:|.
Zfish   144 GLLMERASA----GSPISPGNIHSSRPLHIPGKPVPVRQPPHRNHVHKQSEKTTRVRTVLNEKQL 204

  Fly   354 RAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDS 418
            ...:..:..:|:|...::|.|.:.||||.|:::|||||:|.|.||                    
Zfish   205 HTLRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK-------------------- 249

  Fly   419 QESLDSSLATKIKDEAHSDSESQLESPYSTTSDGLT----------RMRCTIKDEQEQVPFNCME 473
                .|.|..:::.:.|:|         .|...|||          |...|::....:|     :
Zfish   250 ----KSILMKQLQQQQHND---------KTNLQGLTGTPLVAGSPIRHDTTVQGNPVEV-----Q 296

  Fly   474 TNKENCNKNSEPILNTILGLSYATFQQLM 502
            |.:......||..|.:  .|....||||:
Zfish   297 TYQPPWKALSEFALQS--DLDQPAFQQLV 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757 23/54 (43%)
LIM 259..313 CDD:413332 19/53 (36%)
COG5576 <332..439 CDD:227863 31/131 (24%)
HOX 341..393 CDD:197696 21/73 (29%)
isl2aXP_005163214.1 LIM1_Isl 27..81 CDD:188752 22/53 (42%)
LIM2_Isl 89..143 CDD:188760 19/53 (36%)
HOX 192..248 CDD:197696 21/55 (38%)

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